Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A12
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   0.43 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   0.75 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   1.7  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   3.0  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   3.0  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    24   5.3  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   5.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   5.3  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    24   5.3  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    24   7.0  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    23   9.2  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 94   LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 204
            LSI+ AK  TI  +  +  + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 234 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 326
           L+ SYY PF    DN  ++ V  YEA +  +
Sbjct: 20  LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 180 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 272
           G  P+  +Y P +  YYP   +Y  P   +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 123 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 293
           NFY  +    YF   T G+ S+P F   +      YP   S Y P    P   ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 54  HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 212
           H  FWWS  +  NL     E+   NF   L     FE   N +    EFS  SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -1

Query: 272 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 144
           RP +  ++V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 30  RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 12  EDIGFNSYYYYFHSHLPFWWSSERYG 89
           +DIG  +Y       L F W S+R+G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 66  WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 164
           +WS+    N K  R E Y NF++ +  T  ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 39   YYFHSHLPFWWSSERY 86
            Y    + PFWW+S+R+
Sbjct: 1469 YQLLKNNPFWWTSQRH 1484


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 159  RSNNVLLIVGRNCNIFRHG 103
            R+N+ L+I G  C +FR G
Sbjct: 963  RNNDFLIIYGIGCEVFRLG 981


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 153 YFERLTNGLGSIPEFSWYSP 212
           YF+     LG+   F WY P
Sbjct: 349 YFDNSLENLGNYNSFIWYGP 368


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 66  WWSSERYGNLKHRRGEIYYNFYQQL 140
           WW     G   H RG+   NF +++
Sbjct: 644 WWEGFVVGEDDHNRGQFPSNFVREI 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,003
Number of Sequences: 5004
Number of extensions: 25175
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)