Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A12
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 28 2.1
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 3.7
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 3.7
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 26 6.4
02_04_0244 - 21248449-21249038,21249240-21249438,21249963-212502... 26 6.4
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 26 8.5
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 26 8.5
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 26 8.5
01_01_0924 + 7301611-7301737,7301890-7302518 26 8.5
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 318 TVLLRSSLRCVDCSCPAFERMG 253
TVLL +S + C C FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 163 VLQTAWVPYLNSLGTRLLRLVTI 231
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 163 VLQTAWVPYLNSLGTRLLRLVTI 231
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +3
Query: 117 YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYP---LMTSYYFPFAQRP 272
+Y F+ T YY +G P ++ + + TG+Y L + + P + P
Sbjct: 1250 WYLFFMYFTLSYYTFYGMMAVGLTPNYNMSTVVSTGFYTMWNLFSGFLIPLTRIP 1304
>02_04_0244 -
21248449-21249038,21249240-21249438,21249963-21250212,
21250552-21250577
Length = 354
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 105 RGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGY 227
R Y N Q+ YY +R TNG I E + S GY
Sbjct: 17 RSRCYNNLPQEHVQLYYSQRATNGGLLIAEATGVSETAQGY 57
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 159 ERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNL 287
+ L GS+ F W PIKT Y +S A R YNL
Sbjct: 728 QELLGKTGSVCSF-WMDPIKTHCYVTFSSVEEALATRNAVYNL 769
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 61 LSGGVLRDMVTLSIAVAKYITIST 132
+SGG L +VT +AV +ITI T
Sbjct: 77 ISGGHLNPVVTFGLAVGGHITILT 100
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 72 SSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 251
S E + L HRRGEI + +++ + L +G G S TG P TS
Sbjct: 1085 SWEGWNRLDHRRGEIRLDVRREMDDS-PLDNLFDGNGLDSSAGADSSSSTGSPPSSTSSS 1143
Query: 252 FPFAQRP 272
P +Q P
Sbjct: 1144 PPSSQSP 1150
>01_01_0924 + 7301611-7301737,7301890-7302518
Length = 251
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 61 LSGGVLRDMVTLSIAVAKYITI 126
+SGG L VTLS+AV +IT+
Sbjct: 76 VSGGHLNPAVTLSLAVGGHITL 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,072,318
Number of Sequences: 37544
Number of extensions: 142087
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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