Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A12
(332 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14) 29 0.94
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30) 27 3.8
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 27 5.0
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 27 5.0
SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012) 27 5.0
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 26 6.6
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 26 8.8
>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
Length = 869
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 94 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 219
+ +A AKYI +S + + VI + S + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 33 YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 158
YYYY++ + +++ Y H YY +Y YY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 33 YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 158
YYYY++ + +++ Y H YY +Y YY+
Sbjct: 110 YYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/52 (25%), Positives = 19/52 (36%)
Frame = +3
Query: 9 TEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 164
TE + F S + FH W H+ E+Y+N L + R
Sbjct: 48 TESLKFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYR 99
>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
Length = 173
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/54 (24%), Positives = 19/54 (35%)
Frame = +3
Query: 3 YLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 164
Y E + F S + FH W H+ E+Y+N L + R
Sbjct: 31 YSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFNKKTSLLANVHLYR 84
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 36 YYYFHSHLPFWWSSER 83
+YYF + WW SER
Sbjct: 7 FYYFTKFIDIWWCSER 22
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 225 YYPLMTSYYFPFAQRPDNYN 284
Y PL T+ ++ + RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579
>SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)
Length = 89
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 79 RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLR 219
+ +VTL I ++ S N+ +H + + +VPY +S+ T LL+
Sbjct: 29 KSLVTLGIVISTLAENSLNSYEHTKKLAYRKKLFVPYRDSVLTFLLK 75
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 272 RPLSEWEIV*SHQGIVTSLN 213
RPL +W IV ++QG + S+N
Sbjct: 3254 RPLEDWPIVPTNQGTLVSVN 3273
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 201 WYSPIKTGYYPLMTSYYFPFAQRPDNY 281
WYSPI G Y M ++ PDNY
Sbjct: 432 WYSPINYGQYGSMAQCWY----SPDNY 454
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 61 LSGGVL-RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 204
L G+L + V ++V+ YI S + V+T + ++ +PYL LG
Sbjct: 468 LGAGLLAKKAVQAGLSVSPYIKTSLSPGSGVVTYYLQESGVLPYLEQLG 516
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 51 SHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGS 185
SH FW+SS R+ R + L +R + RLT+ LGS
Sbjct: 376 SHSGFWFSSSRFS----RSSSSISDSLSSLRSRASWRRLTDVLGS 416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,567
Number of Sequences: 59808
Number of extensions: 173521
Number of successful extensions: 416
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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