Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A12
(332 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-9|CAN99688.1| 225|Caenorhabditis elegans Hypothetical pr... 31 0.20
AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical ... 27 2.5
Z69634-1|CAA93450.2| 271|Caenorhabditis elegans Hypothetical pr... 27 4.3
AC006708-16|AAF60431.2| 312|Caenorhabditis elegans Hypothetical... 26 7.5
Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z75711-4|CAB00030.1| 134|Caenorhabditis elegans Hypothetical pr... 25 10.0
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 25 10.0
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 25 10.0
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 25 10.0
>Z81579-9|CAN99688.1| 225|Caenorhabditis elegans Hypothetical
protein R13H4.2a protein.
Length = 225
Score = 31.1 bits (67), Expect = 0.20
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 6 LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 152
L +D ++ YYY+ + ++ S RY + Y+N Y TRY
Sbjct: 71 LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119
>AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical
protein K03H6.2 protein.
Length = 348
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 54 HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 155
HLPF + + + H R EI+YN + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297
>Z69634-1|CAA93450.2| 271|Caenorhabditis elegans Hypothetical
protein B0001.1 protein.
Length = 271
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 189 PEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAI 314
P++S + P + Y L S Y RP Y+ + + E++
Sbjct: 56 PQYSHFQPAGSKPYTLFKSVYTNSTNRPQEYSFKTERTTESL 97
>AC006708-16|AAF60431.2| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.7 protein.
Length = 312
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 99 HRRGEIYYNFYQQLTTRYY-FERLTNGL-GSIPE 194
H G ++Y FY L T + E+L GL S+P+
Sbjct: 111 HNAGSVHYYFYSALKTMWSPMEKLLRGLKDSLPD 144
>Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical
protein T06G6.2 protein.
Length = 339
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/67 (20%), Positives = 33/67 (49%)
Frame = +1
Query: 58 CLSGGVLRDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLRLVTIP* 237
C S G+ + ++++ ++ + ++ + ++T W + S TRL+ LV +
Sbjct: 14 CASEGLTNALTSITVKMSSVLVVTVILLSYYFARLAIRTLWKNNIFSNSTRLILLVCL-- 71
Query: 238 *LHTISH 258
L++I H
Sbjct: 72 -LNSIIH 77
>Z75711-4|CAB00030.1| 134|Caenorhabditis elegans Hypothetical
protein K02B12.6 protein.
Length = 134
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 126 FYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 251
+Y + Y E NG S E ++Y+PI + Y+ M Y+
Sbjct: 48 YYNTESYGKYDEHGNNGKDSHYEPNYYNPIASYYHSYMPKYH 89
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 45 FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 149
FH W + +YG +K + G +YN + Q+ R
Sbjct: 173 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 210
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 45 FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 149
FH W + +YG +K + G +YN + Q+ R
Sbjct: 223 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 260
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 45 FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 149
FH W + +YG +K + G +YN + Q+ R
Sbjct: 300 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,782
Number of Sequences: 27780
Number of extensions: 132122
Number of successful extensions: 270
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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