Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A12
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.25 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   0.77 
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   1.8  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    26   5.5  
At3g49220.1 68416.m05379 pectinesterase family protein contains ...    26   7.2  
At2g20000.1 68415.m02338 cell division cycle family protein / CD...    26   7.2  
At1g36310.1 68414.m04513 expressed protein                             26   7.2  
At5g41040.2 68418.m04989 transferase family protein similar to h...    25   9.5  
At5g41040.1 68418.m04988 transferase family protein similar to h...    25   9.5  
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro...    25   9.5  
At1g28340.1 68414.m03481 leucine-rich repeat family protein cont...    25   9.5  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 233 GIVTSLNRRVPREFRYGTQAVCKT 162
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 230 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 141
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +3

Query: 96  KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 272
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 171  NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIF 332
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ F
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1057


>At3g49220.1 68416.m05379 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 598

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 87  GNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGS 185
           G   H RG + +N    L T YY E L +G GS
Sbjct: 518 GGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGS 550


>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
           family protein low similarity to SP|P30260|CC27_HUMAN
           Protein CDC27Hs (Cell division cycle protein 27 homolog)
           Homo sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 744

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 129 YQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 251
           YQ+       ERL   L  + E   Y+P ++  Y LM   Y
Sbjct: 658 YQKANILVCLERLDEALEVLEELKEYAPSESSVYALMGRIY 698


>At1g36310.1 68414.m04513 expressed protein
          Length = 404

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 102 RRGEIYYNFYQQLTTRYYFERLTNGLGS 185
           R+G + YN Y  + +    ERL +G+G+
Sbjct: 352 RKGAVVYNRYYHVFSEGELERLASGVGN 379


>At5g41040.2 68418.m04989 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 441

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 131 PTINNTLLLRASYKRLGFHT 190
           P++++TLL+  ++ RLGFHT
Sbjct: 368 PSLSSTLLI-TTWSRLGFHT 386


>At5g41040.1 68418.m04988 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 457

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 131 PTINNTLLLRASYKRLGFHT 190
           P++++TLL+  ++ RLGFHT
Sbjct: 384 PSLSSTLLI-TTWSRLGFHT 402


>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
           [Rhodococcus sp.] GI:8926386; contains Interpro entry
           IPR000379
          Length = 392

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 252 FPFAQRPDNYNLH 290
           FPF  RPD  NLH
Sbjct: 252 FPFLSRPDEVNLH 264


>At1g28340.1 68414.m03481 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to
           receptor-like protein kinases
          Length = 626

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 231 PLMTSYYFPFAQRPDN-YNLHSV-KNYEAIR 317
           PL T  YFP ++ P+N YN+  V K + ++R
Sbjct: 71  PLKTLRYFPISEGPNNCYNIVRVPKGHYSVR 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,663,530
Number of Sequences: 28952
Number of extensions: 122445
Number of successful extensions: 348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)