Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A09
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    34   0.020
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.58 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.77 
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   4.1  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   9.5  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   9.5  

>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 518 DNKFALKSGYGKYLGVTKDGVVIGRSDAVGPMEQW 622
           +N   LKS  GKY+  +K G +    +AVG  EQW
Sbjct: 97  NNTILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQW 131


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 432 SRADM*QFFPNSIDIDPVKSSIFSTFHQPACLIRSSSTFESSPCS 298
           S+ D  +    S+ ++   S IF T H P+  + S S+FE+SP S
Sbjct: 330 SKVDAMEIHSGSLPLNIDSSPIF-TNHSPSSSLSSESSFEASPSS 373


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 27/106 (25%), Positives = 44/106 (41%)
 Frame = -3

Query: 531 ANLLSPAGNAVKISSGEGPSPAACGAPIVNSP*SRADM*QFFPNSIDIDPVKSSIFSTFH 352
           A+  S + + +  SS    SP +  + I +S  S +       ++I      SS FS+  
Sbjct: 263 ASSSSSSSSIISSSSSSSSSPTSTSSTISSSS-SSSSSPTSTSSTISSSSSSSSSFSSTL 321

Query: 351 QPACLIRSSSTFESSPCSXXXXXXXXXXXLSPFNFSLPRFTAAYSS 214
             + +  SSS+F SSP S            S  +FS    ++  SS
Sbjct: 322 SSSSM-SSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSS 366



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
 Frame = -3

Query: 639 SCHTGSHCSIGPTA-SDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAA 463
           S  + +  S  PT+ S   +++ S V+    P     + L S + +   I S    S + 
Sbjct: 191 STSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250

Query: 462 CGAPIVNSP*SRADM*QFFPNSIDIDPVKSSIFSTFHQPACLIRSSSTFESSPCSXXXXX 283
             +   +S  S A       +S  I    SS  S+    +  I SSS+  SSP S     
Sbjct: 251 SSSLSSSSSSSTASS---SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI 307

Query: 282 XXXXXXLSPFNFSLPRFTAAYSS 214
                  S F+ +L   + + SS
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSS 330


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 438 DYSLLEHHMLLEKVLRPKKSLRHFQLEITSLP*NQVMESTLVSQKMELL*VDLMQ 602
           +  LL H + LE    P  S+R   L ITSL    +  S    ++ ELL   L++
Sbjct: 76  EMELLAHLIALEWDRLPSTSVRQHNLPITSLVSRAIDISQFKKEEKELLSTQLIR 130


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 428 LDYGLFT--IGAPHAAGEGPSPEEIFTAFPAGDNKF 529
           L+ G+F     A HAAG G  PE I  +  + ++KF
Sbjct: 227 LEEGIFVPPAEAAHAAGGGRGPELIALSHKSSNSKF 262


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = -3

Query: 642 PSCHTGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGP--SP 469
           PS  T S  S  PT    P+ TP+  +PR  P  D     L P+  ++ +   + P   P
Sbjct: 399 PSSPTFSTRSFSPTPDVTPLVTPAH-SPRLRPMDDPSCVQL-PSIRSLSLRPSQVPLIPP 456

Query: 468 AACGAPIVNSP*SRADM*QFFPNSIDIDPVKSSIFSTFHQPA 343
             C     ++    +      P+S+ +  + +   S  H+PA
Sbjct: 457 LKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPA 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,217
Number of Sequences: 5004
Number of extensions: 46178
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)