Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A09
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0918 + 32990106-32992196                                         29   2.4  
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281...    29   3.2  
08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736...    29   4.2  

>01_06_0918 + 32990106-32992196
          Length = 696

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 591 LPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGA 454
           LP   P    P YFP PD    L++P  +    SS +GP  + CG+
Sbjct: 638 LPSLPPKMPVPSYFPPPD----LVAPV-SVEGTSSTDGPGVSECGS 678


>07_03_0546 -
           19325526-19326054,19327109-19327631,19327898-19328152,
           19328283-19328472,19328473-19328525,19329295-19329555,
           19329670-19329720,19329873-19330121,19330225-19330453,
           19332245-19332559
          Length = 884

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 1   LFSKIQIFTLENVISTYYYCFYTLILSPVLQY 96
           +F+K  I + E+V+       YTLIL P+L+Y
Sbjct: 138 MFNKYPITSKEDVLGALSLVIYTLILIPLLKY 169


>08_02_0737 -
           20572068-20572290,20572785-20572841,20573482-20573672,
           20574566-20574700,20575722-20575871
          Length = 251

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 353 WKVEKIEDLTGSISIEFGKNCYISALDYGL 442
           W+ +   D   +  IE G   YIS LDYG+
Sbjct: 60  WRPDLFSDSMAASGIETGTKLYISNLDYGV 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,855
Number of Sequences: 37544
Number of extensions: 278812
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)