Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A09
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27918| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 1e-26
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 35 0.050
SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0) 31 0.62
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 3.3
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 29 4.3
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_52104| Best HMM Match : FRG1 (HMM E-Value=3.3) 28 5.7
>SB_27918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 116 bits (280), Expect = 1e-26
Identities = 51/111 (45%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Frame = +2
Query: 296 REHGEDSKVDEDLIKHAGWWKVEKIEDLTGSISIEFGKNCYISALDYGLFTIGAPHAAG- 472
R+H E ++ D D I+H GW K+EK +++TG+I+++ + Y+ AL+ GLFT G P G
Sbjct: 31 RKHEEPTETDIDTIRHGGWRKMEKFDEVTGNIALQTWRGSYVEALNNGLFTAGEPREDGV 90
Query: 473 EGPSPEEIFTAFPAGDNKFALKSGYGKYLGVTKDGVVIGRSDAVGPMEQWE 625
P+P E+FTA P + K A+KSGYGKY+ V G + GR++A+GP EQ E
Sbjct: 91 NSPAPVEVFTAVPVSEVKLAIKSGYGKYMSVNTMGDITGRAEAIGPQEQLE 141
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 35.1 bits (77), Expect = 0.050
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S I P++SD+P T+ VTP P N ++P+ + V +S + +P+A P
Sbjct: 801 TTSDDQITPSSSDVPATSDDQVTPPASDVPTASDNQVTPSASDVPTTSDDHVTPSASDVP 860
Query: 450 IVNSP*SRADM*QFFPNSID-IDPVKSSIFST 358
+ P S D + P S + T
Sbjct: 861 TTSDDQVTPSASDVTPTSDDQVTPSSSDVTPT 892
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 645 LPSCHTG--SHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPS 472
+PSC S + P +SD+P T+ VTP P N ++P+ + V +S + +
Sbjct: 511 MPSCDAPATSDDQVTPPSSDVPTTSDDQVTPSSSDVPTTSDNQVTPSASDVPTTSDDQVT 570
Query: 471 PAACGAP 451
P+A P
Sbjct: 571 PSASDVP 577
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + P+ASD+P T+ VTP P + ++P+ + V +S + +P+A P
Sbjct: 563 TTSDDQVTPSASDVPTTSDDHVTPSASDVPTTSDDQVTPSASDVPTTSDDQVTPSASDVP 622
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + P+ASD+P T+ VTP P N ++P+ + V +S + +P+A P
Sbjct: 666 TTSDDHVTPSASDVPTTSDDQVTPSASDVPAASDNQVTPSASDVPSASDDQVTPSAIDVP 725
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/91 (27%), Positives = 40/91 (43%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + P+ASD+P T+ VTP P + ++P+ + V +S + +P+A P
Sbjct: 548 TTSDNQVTPSASDVPTTSDDQVTPSASDVPTTSDDHVTPSASDVPTTSDDQVTPSASDVP 607
Query: 450 IVNSP*SRADM*QFFPNSIDIDPVKSSIFST 358
S P + D P S + ST
Sbjct: 608 -TTSDDQVTPSASDVPTTSDDQPSASDVKST 637
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + P+ASD+P T+ VTP P + ++P+ + V +S +P+A P
Sbjct: 651 TTSDDQVTPSASDVPTTSDDHVTPSASDVPTTSDDQVTPSASDVPAASDNQVTPSASDVP 710
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = -3
Query: 612 IGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAPIVNSP* 433
+ P+ASD+P + VTP P N ++P+ + V +S + +P+A P +
Sbjct: 702 VTPSASDVPSASDDQVTPSAIDVPTTSDNQVTPSASDVPTASDDQVTPSASDVPTTSDDQ 761
Query: 432 SRADM*QFFPNSID-IDPVKSSIFST 358
S D + P S + ST
Sbjct: 762 VTPSASDVMSTSDDQVTPPASDVMST 787
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + P++SD+P T+ + VTP P + ++P+ + V +S + +P+A P
Sbjct: 533 TTSDDQVTPSSSDVPTTSDNQVTPSASDVPTTSDDQVTPSASDVPTTSDDHVTPSASDVP 592
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 612 IGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
+ P +SD+P T+ VTP P + ++P+ + V +S + +P+A P
Sbjct: 642 VTPPSSDVPTTSDDQVTPSASDVPTTSDDHVTPSASDVPTTSDDQVTPSASDVP 695
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + P+ASD+P + + VTP P + ++P+ V +S +P+A P
Sbjct: 681 TTSDDQVTPSASDVPAASDNQVTPSASDVPSASDDQVTPSAIDVPTTSDNQVTPSASDVP 740
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 612 IGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
+ P ASD+P T+ +TP P + ++P + V +S +P+A P
Sbjct: 792 VTPPASDVPTTSDDQITPSSSDVPATSDDQVTPPASDVPTASDNQVTPSASDVP 845
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAA 463
+ S + P+A D+P T+ + VTP P + ++P+ + V +S + +P+A
Sbjct: 711 SASDDQVTPSAIDVPTTSDNQVTPSASDVPTASDDQVTPSASDVPTTSDDQVTPSA 766
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAA 463
T S + P+ASD+P + VTP P + ++P+ + V +S + +P A
Sbjct: 726 TTSDNQVTPSASDVPTASDDQVTPSASDVPTTSDDQVTPSASDVMSTSDDQVTPPA 781
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 606 PTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
P+ASD+ T+ VTP P + ++P+ + V +S + +P+A P
Sbjct: 629 PSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPTTSDDHVTPSASDVP 680
>SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)
Length = 401
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 474 SPAACGAPIVNSP*SRADM*QFFPNSIDIDPVKSSIFSTFHQP 346
+P A G P++N+P R + F P+ ++ PV S + ST P
Sbjct: 273 TPEAIG-PLLNNPEFREGLAPFLPSGSELPPVSSEVSSTLWSP 314
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 500 TAFPAGDNKFALKSGYGKYLGVTKDGVVIGRSDAVGPMEQW 622
+++P GDN SGY Y + G G +DA +Q+
Sbjct: 253 SSYPNGDNSTVSNSGYSSYQYHSNTGANTGSTDATPSNDQY 293
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -3
Query: 630 TGSHCSIGPTASDLPITTPSFVTPRYFP*PDFKANLLSPAGNAVKISSGEGPSPAACGAP 451
T S + +ASD+P T+ VTP P + ++P+ + V+ ++ + +P+A P
Sbjct: 437 TASGDQVTQSASDVPTTSDDQVTPPARDVPTTSDDQVTPSASDVQTATYDQVTPSASDVP 496
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 427 PR-LWTIHYWSTTCCWRRSFARRNLYGISSWR*QVCL 534
PR LW WS + W RS R+L+ S WR +CL
Sbjct: 1642 PRSLWPWSLWSRSM-WPRSLWPRSLWPRSLWRWSLCL 1677
>SB_52104| Best HMM Match : FRG1 (HMM E-Value=3.3)
Length = 275
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 491 EIFTAFPAGDNKFALKSGYGKYLGVT---KDGVVIGRSDAVGPMEQWEPVWQDGR 646
E F A + AL++ YG Y+ T K+G V S+ +GP E ++ V G+
Sbjct: 21 EQFEAVQHSQGRVALRTCYGTYIKFTPASKNGAVRMDSETIGPWEIFQIVRLPGQ 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,476
Number of Sequences: 59808
Number of extensions: 315789
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -