Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A09
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-7|CAB04969.2|  274|Caenorhabditis elegans Hypothetical pr...    94   9e-20
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    29   3.8  
AC006621-1|AAK68261.2|  545|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna bin...    27   8.7  
AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna bin...    27   8.7  
AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna bin...    27   8.7  

>Z82083-7|CAB04969.2|  274|Caenorhabditis elegans Hypothetical
           protein ZK1010.3 protein.
          Length = 274

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 45/121 (37%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
 Frame = +2

Query: 308 EDSKVDEDLIKHAGWWKVEKIEDLTG--SISIEFGKNC-----YISALDYGLFTIGAPHA 466
           +  K+D D +++ GW K+    D+ G  +++IE          Y++A+D G FTIG PH 
Sbjct: 37  DKEKIDPDTVENGGWRKIADEFDMKGGTNVAIEVASGAGSTRTYVAAMDNGKFTIGFPHP 96

Query: 467 AGEGPSPEEIFTAFPA-GDNKFALKSGYGKYLGVTKDGVVIGRSDAVGPMEQWEPVWQDG 643
            GEGP+PEEIF       D+K +LK+G+G+Y+GV  +  ++  ++A+G  EQ+  V+Q+G
Sbjct: 97  EGEGPNPEEIFALVKTPDDSKISLKTGFGRYVGVDSEYQLVAMAEAIGSREQFVLVFQEG 156

Query: 644 R 646
           +
Sbjct: 157 K 157


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 443  FTIGAPHAAGEGPSPEEIFTAFPAGDNKFALKSGYGKYLGVTKDGVVI 586
            F  G  +  GE PSP  I T   A  +   + + +G  +   +DGV++
Sbjct: 2306 FIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDGVIL 2353


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 443  FTIGAPHAAGEGPSPEEIFTAFPAGDNKFALKSGYGKYLGVTKDGVVI 586
            F  G  +  GE PSP  I T   A  +   + + +G  +   +DGV++
Sbjct: 2306 FIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDGVIL 2353


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 261 SPFNFSLPRFTAAYSSDILYNFQFIDY 181
           SP++ SLP FT  +++   YN  F+ Y
Sbjct: 293 SPYSDSLPHFTNEWNTPTFYNENFMSY 319


>AC006621-1|AAK68261.2|  545|Caenorhabditis elegans Hypothetical
           protein C52A10.1 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = +2

Query: 299 EHGEDSKVDEDLIK--HAGWWKVEKIEDLTGSISIEFGKNCYISALDYGLFTIGAPHAAG 472
           +  +D  V++ LI+     W+ +  +E  T   S ++G N Y+ + DY       P+A  
Sbjct: 378 DKNDDKAVEKRLIQLISDSWFNIGALE--TVKTSTKYGSNAYLGSFDYYNMGSNDPYATW 435

Query: 473 EGPSPEEIFTAFPAGDNKFALKSGYGKYLGVTKDGVVI 586
               P +   A    + K+ L  G GK+  + ++  VI
Sbjct: 436 ---FPFK--AANHGSELKYMLGEGMGKFSPIEEEFKVI 468


>AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform a protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 477 PSPAACGAPIVNSP*SRA 424
           P+ A CGAPIV SP  RA
Sbjct: 259 PTMAVCGAPIVMSPSGRA 276


>AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform c protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 477 PSPAACGAPIVNSP*SRA 424
           P+ A CGAPIV SP  RA
Sbjct: 301 PTMAVCGAPIVMSPSGRA 318


>AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform b protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 477 PSPAACGAPIVNSP*SRA 424
           P+ A CGAPIV SP  RA
Sbjct: 259 PTMAVCGAPIVMSPSGRA 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,882
Number of Sequences: 27780
Number of extensions: 254909
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)