Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A09
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    31   0.66 
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu...    30   1.2  
At1g68580.2 68414.m07836 agenet domain-containing protein / brom...    30   1.2  
At1g68580.1 68414.m07835 agenet domain-containing protein / brom...    30   1.2  
At1g56230.1 68414.m06464 expressed protein                             29   2.0  
At5g09400.1 68418.m01089 potassium transporter family protein si...    28   6.2  
At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid sy...    28   6.2  

>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 252 NFSLPRFTAAYSSDILYNFQ 193
           NF+L RF++ +SSD+LY FQ
Sbjct: 44  NFTLNRFSSKHSSDLLYRFQ 63


>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to cyclophilin [Arabidopsis thaliana]
           gi|2443755|gb|AAB71401
          Length = 224

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 518 DNKFALKSGYGKYLGVTKDGVVIGRSDAVGPMEQWE 625
           DN FA++ G G Y G  +  VVI  S  + P ++W+
Sbjct: 187 DNVFAIEGGAGTYSGKPRKKVVIADSGEI-PKDKWD 221


>At1g68580.2 68414.m07836 agenet domain-containing protein /
           bromo-adjacent homology (BAH) domain-containing protein
           contains Pfam profile PF01426: BAH domain and PF05641:
           Agenet domain
          Length = 648

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
 Frame = +2

Query: 302 HGEDSKVDEDLIKHAGWWKVEKIEDLTGSISIEFGKNCYISALDYGLFT-----IGAPHA 466
           +G+D     D+ +  G+W+ E +  L  SI   F +       D GL       +G    
Sbjct: 255 YGDDGLKPYDITQLEGYWRQEMLRYLNVSILKSF-EGAQAPGTDPGLKAPLVGCVGIRSR 313

Query: 467 AGEGPSPEEIFTAFPAGDNKFALKSGYGKYLGVTKDGVVIGRSD 598
               PSP        AGD K   KS     L VT   +  G  D
Sbjct: 314 KRRRPSPVGTLNVSYAGDMKGDCKSSPDSVLAVTDASIFKGDED 357


>At1g68580.1 68414.m07835 agenet domain-containing protein /
           bromo-adjacent homology (BAH) domain-containing protein
           contains Pfam profile PF01426: BAH domain and PF05641:
           Agenet domain
          Length = 492

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
 Frame = +2

Query: 302 HGEDSKVDEDLIKHAGWWKVEKIEDLTGSISIEFGKNCYISALDYGLFT-----IGAPHA 466
           +G+D     D+ +  G+W+ E +  L  SI   F +       D GL       +G    
Sbjct: 255 YGDDGLKPYDITQLEGYWRQEMLRYLNVSILKSF-EGAQAPGTDPGLKAPLVGCVGIRSR 313

Query: 467 AGEGPSPEEIFTAFPAGDNKFALKSGYGKYLGVTKDGVVIGRSD 598
               PSP        AGD K   KS     L VT   +  G  D
Sbjct: 314 KRRRPSPVGTLNVSYAGDMKGDCKSSPDSVLAVTDASIFKGDED 357


>At1g56230.1 68414.m06464 expressed protein
          Length = 752

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = +2

Query: 377 LTGSISIEFGKNCYISALDYGLFTIGAPHAAGEGPSP---EEIFTAFPAGDNKFALKSGY 547
           LT ++    G+ C++  +  G    G     GE PSP   EE  T    G   + ++   
Sbjct: 481 LTRTVLDHAGRECFVIRIRVGK---GVFKRGGEVPSPVKSEERITEVRVGSWSY-VEGSI 536

Query: 548 GKYLGVTKDGVVIGRSDAVGPMEQWEPVWQ 637
           GK         V+G      PME WE  W+
Sbjct: 537 GK-----APAKVVGTVTPKEPMEDWEAAWE 561


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 1   LFSKIQIFTLENVISTYYYCFYTLILSPVLQYL 99
           +FSK  +   E+VI       YTL+L P+++Y+
Sbjct: 130 MFSKSPVQEKEDVIGALSLVLYTLLLVPLIKYV 162


>At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid
           synthase family protein similar to cyclopropane synthase
           [Sterculia foetida] GI:21069167; contains Pfam profile
           PF02353: Cyclopropane-fatty-acyl-phospholipid synthase
          Length = 406

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 442 IHYWSTTCCWRRSFARR 492
           IHY+ T  CWR++F  R
Sbjct: 325 IHYYHTLRCWRKNFLER 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,530
Number of Sequences: 28952
Number of extensions: 234973
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)