Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A06
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 30 0.35
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 28 1.1
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 4.3
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.6
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 7.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.5
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.9
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 9.9
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 544 PEPKQCA-CRLRHYVPERC-EDRQPAQRDCRQCHRGVH 437
P K+C C L ++ RC E R+ R CR CH H
Sbjct: 122 PWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTH 159
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 148 DAVAASV-VRALGARSRCRGEGGVKLSKSSRWREDRTRSSPRRVPAGARC 2
DA+A SV + + S RG G+ L+ +S W T SS + P A C
Sbjct: 365 DAMADSVSTSSASSLSVPRGFSGM-LNNNSEWNNSMTMSSNQETPTAASC 413
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 330 RTDATPSPTSSAVATNSATMGRHHSHVQAPPPPPA 226
R A P P +A A +++T APPP P+
Sbjct: 4 RRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPS 38
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 303 SSAVATNSATMGRHHSHVQAPPPPPATL 220
SS+ +S T H SH PPPPP L
Sbjct: 29 SSSFHESSLTSSTH-SHPSNPPPPPTRL 55
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 115 GARSRCRGEGGVKLSKSSRWREDRTRSSPR 26
G S +G G +SK++R + R+R PR
Sbjct: 201 GLESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 315 PSPTSSAVATNSATMGRHHSHVQAPPP 235
P P SS+ NS T H+S PPP
Sbjct: 167 PQPISSSSTYNSTTSSYHNS-TSTPPP 192
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 312 SPTSSAVATNSATMGRHHSHVQAPPPPP 229
SP A + A M R S PPPPP
Sbjct: 885 SPFPGASSAQPAAMSRTSSVSTLPPPPP 912
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = -2
Query: 429 PETGPNTIAFPITTNPKXXXXXXXXXXXXXCTGRTDATP-SPTSSAVATNSATMGRHHSH 253
P T ++ + PI T T +T PT ++ + T+ +
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 311
Query: 252 VQAPPPPPATLS 217
+ PPPPA+ S
Sbjct: 312 STSTPPPPASTS 323
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 312 SPTSSAVATNSATMGRHHSHVQAPPPPPATLSCL 211
+P S + T+++ + R+ + PPPPP S L
Sbjct: 520 APQSPSSNTSASVLTRNFVAHRDPPPPPTETSSL 553
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 327 TDATPSPTSSAVATNSATMGRHHSHVQAPP 238
T AT + T + S+T G+H+ +PP
Sbjct: 256 TTATSTLTDAGFGDKSSTAGKHNVETTSPP 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,219
Number of Sequences: 5004
Number of extensions: 30256
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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