Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A06
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 31 0.64
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 30 2.0
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 2.6
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_47342| Best HMM Match : VWA (HMM E-Value=0) 29 3.4
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 28 6.0
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 28 6.0
SB_59632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27) 28 6.0
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 28 7.9
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 28 7.9
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 28 7.9
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 34.7 bits (76), Expect = 0.069
Identities = 22/89 (24%), Positives = 35/89 (39%)
Frame = -1
Query: 670 RSRRDQHPGERGLDSGRSNRRDARPRHRTPGEGGGRYRSQQRPEPKQCACRLRHYVPERC 491
+SRRD+ R D+ + R TP + GR +++RPE + R P
Sbjct: 11 QSRRDRPQRNRNRDNSSDSVSSVRSERETPRDRNGRTATRRRPERRDERPRKLDDKPREL 70
Query: 490 EDRQPAQRDCRQCHRGVHVRTRDGAEHDR 404
DR + + H R A+ +R
Sbjct: 71 LDRDSGRAGSGEKREDKHRRLEKPAQRER 99
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -1
Query: 670 RSRRDQHPGERGLDSGRSNRRDARPRHRTPGEGGGRYRSQQRPEPKQCACRLRHYVPERC 491
R ++D +R + R + RD RPR+R+P + ++ R + ++ A R R P
Sbjct: 246 RDQKDVRARDRDPERSR-DYRDGRPRNRSPERQRDQRDARPRDQREREADRSRDGRPRES 304
Query: 490 EDRQPAQRDCR 458
D + RDCR
Sbjct: 305 RDAE-RPRDCR 314
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 324 DATPSPTSSAVATNSATMGRHHSHVQAPPPPP 229
DA SP S++ T S + G H V PPPPP
Sbjct: 2298 DANSSPGSNS--TRSPSTGSHSPSVPPPPPPP 2327
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.9 bits (64), Expect = 2.0
Identities = 41/212 (19%), Positives = 69/212 (32%)
Frame = -1
Query: 670 RSRRDQHPGERGLDSGRSNRRDARPRHRTPGEGGGRYRSQQRPEPKQCACRLRHYVPERC 491
R R + P +R S R R R R RTP R RS+ P + + R + P++
Sbjct: 190 RKSRSRSPRKRSR-SPRKMLRSPRKRSRTP-----RKRSRS-PRKRSRSPRKGSHTPKK- 241
Query: 490 EDRQPAQRDCRQCHRGVHVRTRDGAEHDRVSDHHXXXXXXXXXXXXXPWPVHRQNGRHPE 311
R P + R R + R+R + H R + ++
Sbjct: 242 RSRSPRRNSQRHKERSRYHRSRSRSRHRRSRSNSPSMRKSDRKFKKSQRKSRSRSRNRSR 301
Query: 310 SHQQRRSH*FRHDGXXXXXXXXXXXXXXXXLVSRGHGVCPRAVTVQWQAVTAEPDAVAAS 131
SH ++RS SR + + +++ S
Sbjct: 302 SHSRKRSRSSSRSKSRKKSGSRSNSQSKQKSRSRSRSNSQSRKKSSSKKSRSRSRSISQS 361
Query: 130 VVRALGARSRCRGEGGVKLSKSSRWREDRTRS 35
+ +SR R K +R ++ R+RS
Sbjct: 362 RKKVKSKKSRSRSHSNSPSRKKARSKKSRSRS 393
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 667 SRRDQHPGERGLDSGRSNRRDARPRHRTPGE--GGGRYRSQQRPEPKQCACRLRHYVPER 494
++R PG+ GR R+ +PR G GG R R QR E R VPER
Sbjct: 195 NQRSSSPGDAS--PGRGGSREPKPRRNREGRQGGGSRDRDSQRRE--------RSPVPER 244
Query: 493 CEDRQ 479
++R+
Sbjct: 245 RQERR 249
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 39 RVLSSRQRELFESLTPPS-PRHRDRAPSARTTLAATASGSAV 161
R L R R+ L P S P HRD+ P+ T AT SG +
Sbjct: 1621 RTLRGRNRQGRPPLAPGSRPEHRDQEPAPEPTDNATPSGPQI 1662
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = -1
Query: 670 RSRRDQHPGERGLDSGRSNRRDARPRHR-TPGEGGGRYRSQQRPEPKQCACRLRHYVPER 494
RSR ER RS+RRD RP+ R + G GR + P+ + R +
Sbjct: 610 RSRERPRSRERPRSRERSDRRDERPQRRGSRGRSPGRREREGERRPRSAERQSRRQDEPK 669
Query: 493 CEDR--QPAQRD 464
E QP + D
Sbjct: 670 GEPHVVQPEETD 681
>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
Length = 483
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/75 (28%), Positives = 26/75 (34%)
Frame = -2
Query: 426 ETGPNTIAFPITTNPKXXXXXXXXXXXXXCTGRTDATPSPTSSAVATNSATMGRHHSHVQ 247
E P+T PITT P T R +T PTS + T T +
Sbjct: 247 ENSPSTTRRPITTIPTSRPTRLSTPSTRRKTTRRASTIPPTSRPITTGVETTS---LITE 303
Query: 246 APPPPPATLSCLVAM 202
P P P C + M
Sbjct: 304 FPWPSPGHFKCSLFM 318
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 513 RRRQAHCLGSGRCWLRYRPPPSP 581
R Q CL SGRC PPP P
Sbjct: 472 RTHQPTCLVSGRCQKSLSPPPQP 494
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 327 TDATPSPTSSAVATNSATMGRHHSHVQAPPPPPATLSCL 211
T +PSP+ S+ +++S++ S +PP PP + L
Sbjct: 572 TSPSPSPSPSSSSSSSSSSSSSSSSSSSPPSPPRSFIIL 610
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -1
Query: 667 SRRDQHPGERGLDSGRSNRRDARPRHRTPGEGGGRYRSQQRPEPKQCACRLRHYVPERCE 488
+RR Q GE+ + G++ R +TP EG R + Q++ K R PE +
Sbjct: 132 TRRRQ--GEKPPEEGKNRNTRKRQEQKTPEEGKNR-KHQKKARTKTTRSRQEQKTPEEGK 188
Query: 487 DRQPAQR 467
++ +R
Sbjct: 189 NKNHQKR 195
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -1
Query: 661 RDQHPGERGLDSGRSNRRDARPR--HRTPGEGGGRYRSQQRPEPKQCACRLRHYVPERCE 488
RD+ G+RG D G RP+ P GG R+R R + R P R E
Sbjct: 853 RDERGGDRGPDRGGDKPGAWRPKWQREEPDRGGDRWRGGDRRDDGP-----RRDAP-REE 906
Query: 487 DRQPAQRD 464
R+P RD
Sbjct: 907 WRRPGDRD 914
>SB_59632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 471 CAGCLSSQRSGT*WRRRQAHCLGSG---RCWLRYRPPPSPGVRCRGL 602
C+G LS+ +G R L S RC+ RY PPP P ++ G+
Sbjct: 114 CSGALSA--AGVVVTRSVTATLASADVRRCFCRYAPPPMPAMQDLGI 158
>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 625 GRSNRRDARPRHRTPGEGGGRYRSQQRPEPKQCACRLRHYVPERCEDRQPAQRDCRQ 455
G + RRD R RHR+ R+ + E + C C ER D+ +R +Q
Sbjct: 985 GAARRRDHRKRHRSKRAKVPVSRAGGQGETESCGCTRGVANAERSGDKHAKRRGLQQ 1041
>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 315 PSPTSSAVATNSATMGRHHSHVQAPPPPP 229
P SAVAT S ++ R H + PPPP
Sbjct: 311 PGYVRSAVATTSHSLPRGPVHAKKGPPPP 339
>SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)
Length = 888
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 306 TSSAVATNSATMGRHHSHVQAPPPPPATLSCL 211
T S V TNS H S Q PP PPA + L
Sbjct: 130 TESLVETNSTWNLLHSSIGQEPPEPPAVVQIL 161
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 670 RSRRDQHPGERGLDSGRSNRRDARPRHRTPGEGGGRYRSQQRPEPK 533
++ D++ G+ R+ ARP + +G R+ + RP+P+
Sbjct: 962 KAGNDENSGKETRPRKEKQRKTARPSEQPEYQGVSRHPASDRPQPR 1007
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 309 PTSSAVATNSATMGRHHSHVQAPPPPPATLSC 214
PT++ T T H S PPPPP C
Sbjct: 155 PTTTKKPTTKPTPAPHSSPSPTPPPPPIIPPC 186
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 330 RTDATPSPTSSAVATN-SATMGRHHSHVQAPPPPPATL 220
R+ A + TS+ + N SAT+ APPPPP L
Sbjct: 76 RSGANVNTTSTPMTANQSATVTSQPQTTPAPPPPPPPL 113
>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -3
Query: 575 RWRPVPQPA---APRTQAVRLPPAPLRT 501
R RP P+P+ APR + LPP PL T
Sbjct: 772 RERPRPRPSQQPAPRGEGSNLPPLPLHT 799
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/87 (22%), Positives = 31/87 (35%)
Frame = -1
Query: 562 YRSQQRPEPKQCACRLRHYVPERCEDRQPAQRDCRQCHRGVHVRTRDGAEHDRVSDHHXX 383
Y+ RP P+ CA R P++C Q A + ++ + + G+ + VS
Sbjct: 837 YKISHRPCPEACAKRCTDDCPDKCCKVQDATKPSKE-ENSLKPTNQGGSSNKEVSTFFLK 895
Query: 382 XXXXXXXXXXXPWPVHRQNGRHPESHQ 302
P H P SHQ
Sbjct: 896 PTGHANHDASTS-PEHHGKQDEPISHQ 921
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,087
Number of Sequences: 59808
Number of extensions: 358290
Number of successful extensions: 1754
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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