Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A05
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   5.8  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   5.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   7.6  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 SPVSVVNVLPAKPDM*EPRLCPIR*IASGLIPPFAIA 68
           +P+SV + +PA P +   RLC    IAS L PP A++
Sbjct: 133 APISVKSSIPAIPRVTFERLCYESAIASNL-PPNALS 168


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 384 TSGKGSSAAGIRCS 343
           TSGKGSSAAG+  S
Sbjct: 395 TSGKGSSAAGLTAS 408


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 317 TLWSRRLLPEQRIPAA 364
           T WSRRLL  QR+P A
Sbjct: 410 THWSRRLLTFQRLPRA 425


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 295 PSVCITSTYLASVCLRRSSAGILLKQGPAGSSPDI 191
           P++ I    L S CL+ S AG+ L Q P G SP I
Sbjct: 652 PNLEIFENVLKS-CLQ-SVAGVALSQSPIGESPII 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,396
Number of Sequences: 5004
Number of extensions: 46299
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)