Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A05
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412... 40 0.002
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 32 0.27
07_03_1648 - 28382520-28382963,28383623-28383868 29 3.4
04_04_0967 + 29782460-29783725 28 4.4
12_01_0562 - 4555384-4555673,4555775-4555883,4555981-4556084,455... 28 5.9
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425... 28 5.9
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 28 5.9
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 27 7.7
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668... 27 7.7
09_03_0142 - 12718888-12719724,12719767-12720369 27 7.7
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 7.7
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150... 27 7.7
02_01_0586 - 4334896-4335177,4336340-4338007 27 7.7
>08_02_0913 +
22540078-22540166,22540280-22540420,22541151-22541281,
22542278-22542460,22542555-22543195
Length = 394
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 TTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTDA--KYVDVIHTDGGVY 305
TT GL + + + PAGP F ++P + TDA K VD +H GG++
Sbjct: 58 TTQGGLLISEGTVVSPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIF 107
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 WLYLHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISG-FAGKTFTTLTGL 179
W L +Y+ +++ KG ++ + + L ++L I FA TF T L
Sbjct: 579 WGQLQLLSYLNLSQNTFNDLIPDSFKGLVNLETLDLSHNNLSGGIPKYFANLTFLTSLNL 638
Query: 180 QVGRISGLDPAGPCFSNI 233
+ G P+G FSNI
Sbjct: 639 SFNNLQGQIPSGGVFSNI 656
>07_03_1648 - 28382520-28382963,28383623-28383868
Length = 229
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 213 PPDPVPISCRLEVRLAL*TSYQRNLICESRGCALSDESHRDSYR 82
PP P P S E R T + ++L+ RGC + D + YR
Sbjct: 12 PPSPPPPSTTSEQRKVF-TLWMKSLVLNGRGCTVYDSTGGIVYR 54
>04_04_0967 + 29782460-29783725
Length = 421
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 422 RLAVEQHGATVAARLEKAVRLLGSAVRVVVGV 327
RLA +HG VAA +R+ G A R+ V V
Sbjct: 318 RLAFAEHGLAVAAVARAVLRVSGLATRLAVNV 349
>12_01_0562 -
4555384-4555673,4555775-4555883,4555981-4556084,
4556643-4556946
Length = 268
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 126 GSHISGFAGKTFTTLTGLQVGRISGL-DP 209
G + GFAG++ GL GRI GL DP
Sbjct: 70 GVSVFGFAGESMAVKQGLLAGRIPGLSDP 98
>06_03_0442 +
20837492-20837621,20841842-20842075,20842435-20842528,
20842653-20842870,20842956-20843095,20843231-20843878
Length = 487
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 111 IGHSLGSHISGFAGKTFTTLTGLQVG 188
+G SL ISG GK TTLTG++VG
Sbjct: 216 VGLSLARTISGATGK--TTLTGVEVG 239
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 432 VNAFPAVRCKDWESFRIGQCDTDIKLMGYGSTPDTRGI--YFLL 557
V A A R K +E + CD DI YGS + GI Y+LL
Sbjct: 2448 VGALDAKRFKVFEERYLNFCDPDIPSFYYGSHYSSMGIVLYYLL 2491
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3
Query: 99 AIHLIGHSLGSHISG------FAGKTFTTLTGLQVGRISGLDPAGPCFSNI 233
A+ L G++L S+I F+ T+ T L + G P+G FSNI
Sbjct: 551 ALSLSGNNLSSYIPNGGIPKYFSNLTYLTSLNLSFNNLQGQIPSGGIFSNI 601
>09_03_0167 +
12965030-12965356,12966100-12966387,12966704-12966826,
12967229-12967611,12967863-12968190,12968324-12968353,
12968837-12968989,12969510-12969815
Length = 645
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 449 SWECVHVADRLAVEQHGATVA 387
SWE + V+DRLA HGA +A
Sbjct: 83 SWESLGVSDRLASALHGAGLA 103
>09_03_0142 - 12718888-12719724,12719767-12720369
Length = 479
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 329 RRLLPEQRIPAAELPFPDVQP 391
RR+L + + AELPFPD P
Sbjct: 67 RRVLDDDAVAVAELPFPDHLP 87
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 90 SPDAIHLIGHSLGSHISGFAGKTFTTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTD 263
SPD++ + G H+SG + LT L+ + + +GP + I LK D
Sbjct: 80 SPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLD 137
>04_03_0818 +
20014685-20014687,20014792-20014831,20014988-20015025,
20015359-20015485,20015571-20015797,20015919-20016064,
20016166-20016284,20016711-20016799,20016881-20017003,
20017123-20017158,20017464-20017562,20017642-20017833
Length = 412
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 387 CTSGKGSSAAGIRCSGSSRRDHRVPLTRK 301
C+ GKG+ + G G DH P RK
Sbjct: 141 CSGGKGNESTGDNFDGVPNIDHTQPFVRK 169
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 225 SNIPAELRLKHTDA-KYVDVIHTDGGVYGLKEPCGHADYYPNSGSQQPNCLFQ 380
+ + EL+LK A + VD + GV+ LK HAD YPN ++ +CLF+
Sbjct: 148 ARVGPELQLKTFPAQRRVDFVAD--GVWALKFL--HADGYPNFYAKYQSCLFE 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,440,941
Number of Sequences: 37544
Number of extensions: 356148
Number of successful extensions: 1069
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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