Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A04
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    85   4e-17
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    76   2e-14
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    73   1e-13
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    31   0.48 
At1g55980.1 68414.m06421 expressed protein                             31   0.48 
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi...    30   1.1  
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    29   3.4  
At1g50080.1 68414.m05618 hypothetical protein                          28   4.5  
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138...    28   6.0  
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138...    28   6.0  
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa...    27   7.9  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 57/192 (29%), Positives = 91/192 (47%)
 Frame = +3

Query: 42  EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 221
           + VG+VG+G +G   A L A+ G  V L D     ++ A A I   +K     GL+   +
Sbjct: 5   KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64

Query: 222 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 401
             D+    ++ T +L       I V E + E+ ++KKK+F++LD +   + I        
Sbjct: 65  G-DDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 402 XXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTL 581
                    +  +QVI  H +NPP  + LVEI+    T  E    T+ + E  G+  V  
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTV-C 181

Query: 582 SREIDGFVLNRI 617
           S++  GFV+NRI
Sbjct: 182 SQDYAGFVVNRI 193


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 51/194 (26%), Positives = 91/194 (46%)
 Frame = +3

Query: 36  KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRG 215
           K +KV I+G GL+G   A       Y V L +V EK +   I  +K  L++  + G +  
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370

Query: 216 NLNADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXX 395
               ++    +KG+ D   + +D   V E V EN+ LK+++F +L+     + I      
Sbjct: 371 E-KFEKTMSLLKGSLDYE-SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428

Query: 396 XXXXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPV 575
                   E  K + +++ +H  +P + +PL+EIV    T  +V      + ++I + PV
Sbjct: 429 TIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV 488

Query: 576 TLSREIDGFVLNRI 617
            +     GF +NR+
Sbjct: 489 VVG-NCTGFAVNRM 501


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 49/191 (25%), Positives = 87/191 (45%)
 Frame = +3

Query: 42  EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 221
           +KV ++G GL+G   A        +V L ++  + +   I  ++  +K+L   G L  + 
Sbjct: 310 KKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLTQD- 368

Query: 222 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 401
            A +     KG  D      D   V E V EN++LK+ +F+ ++ V   + I        
Sbjct: 369 KAGKALSLFKGVLDYT-EFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTI 427

Query: 402 XXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTL 581
                 E    K +++ +H  +P + +PL+EIV +  T  +V     A+ + I + PV +
Sbjct: 428 DLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVV 487

Query: 582 SREIDGFVLNR 614
              I GF +NR
Sbjct: 488 GNCI-GFAVNR 497


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 9   LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 131
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 10  IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 9   LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 131
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 148 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188


>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 334

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 45  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 131
           K+G +G+G++GRS        GY VT+F+
Sbjct: 39  KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 495 IVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNR 614
           I+PAPW K     K +  + ++GQ  +   + I+G  ++R
Sbjct: 515 ILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSR 554


>At1g50080.1 68414.m05618 hypothetical protein
          Length = 91

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 184 FNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMTT 14
           FNC L+   AS I      + +     + NN+ H+    P PTI    D  +  + T
Sbjct: 18  FNCVLLCMFASFIRKLAAQSTIYNLWKQRNNVVHNQVSIPAPTIFKLIDREIRNIIT 74


>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 351

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 439 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 317
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 265 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 307


>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 439

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 439 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 317
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 353 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 395


>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 161

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 453 SHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIM 551
           SHP  PP  VPL   +P P  +P+   +T  +M
Sbjct: 51  SHPSLPPLPVPLPLPLPQPQPQPQQDNETGHLM 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,248
Number of Sequences: 28952
Number of extensions: 279070
Number of successful extensions: 975
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)