Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A02
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   2.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   3.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.6  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    26   6.1  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   8.0  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 532 LMSYTKLRMSLITASFWICTILFISSIFTLVSASIFA 642
           +M  T + +  +  ++W+ T++F    FT++SA  F+
Sbjct: 702 IMQLTMMGLMSLRKAYWLSTVIFPLLCFTVISAYNFS 738


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 202 YLMQKPSEL*IHKLYLTGLTQWQLFFYLSFQNFTLC 309
           Y+ QK ++L +HK  ++ + QW L   L  +   +C
Sbjct: 76  YIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLIC 111


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 603 LINLHSGLGVDFRSD 647
           +INL+SGLG+D +SD
Sbjct: 217 MINLYSGLGIDEKSD 231


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 256 LTQWQLFF--YLSFQNFTLCVINKYTLLQSVMKIP 354
           L  ++LFF  Y +  +  L V+N  TLL S+ K P
Sbjct: 571 LPDYRLFFRRYTNLVDIVLAVLNLVTLLPSIRKNP 605


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 257 NPVRYNLCIHSSLGFCIKY*SARYHSN 177
           +P+ +    + SLGFCI + +A Y SN
Sbjct: 95  SPLGFRQTAYLSLGFCIIWFAANYFSN 121


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 158 ADLQIFNWNDTELINI*CKNQANYEYT 238
           A L  F+W+D+  +N     Q NY+YT
Sbjct: 278 AFLSNFSWSDSTSVNTRYSFQQNYKYT 304


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 489 MYHLSYAIVDVEFRLDVIHQVEDVFDNSL-FLDLHHFVHLINLH 617
           M H+     D+EF    I+ + D  +N    +D  HF+ LI+LH
Sbjct: 620 MDHMKQNTFDMEF----INYLSDFTNNPREVIDYQHFIELIDLH 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,686
Number of Sequences: 5004
Number of extensions: 56566
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)