Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A02
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_6678| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-10)                  29   3.7  
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)            28   6.5  
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.5  
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +3

Query: 126 INIYFFTFVPKRIFKYLIGMIPS*LIFNAKTKRTMNTQVISNGINAMAVIFLSVISKLYV 305
           + + F   +P  I   L G++   L F + T+    TQ+            L +++ +YV
Sbjct: 774 LTLVFLLIIPLLIMTILYGLVIHKLWFKSSTQTIQPTQLAVEKTRKTVTKMLLIVTVIYV 833

Query: 306 MCY 314
           +C+
Sbjct: 834 VCW 836


>SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 677 KPSTWATREGVAAKIDAETRVKIDEMNKMVQIQKEAVIKDILNLVYDIKPELHINY 510
           KP   +T  G + +I  E R+ +D +N+M Q  +++ I  I N +  +   L  ++
Sbjct: 122 KPKRPSTAVGASRQIKLEDRITLDHLNRMRQAFEQSSINYINNKIICVAINLQFSW 177


>SB_6678| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-10)
          Length = 371

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 544 TKLRMSLITASFWICTILFISSIFTLVSASIFAATPSRV 660
           T  R+  + A+FWI  I  ISS+F L S   +   P+ +
Sbjct: 148 TTSRILKVIATFWIACIAIISSLFALNSDRYWTFLPAPI 186


>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 1347

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 686 KSLKPSTWATREGVAAKIDAETRVKID 606
           + ++ + W+ R G+  K+DA   VKID
Sbjct: 700 RDIEENVWSPRFGLKGKVDATVEVKID 726


>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 395 DAAILYLTLTDKNAGIFITDCNKVYLLI 312
           D++  YLT TDK   +  TD NKV+ L+
Sbjct: 195 DSSQRYLTGTDKRFELHATDSNKVFSLL 222


>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = -2

Query: 656 REGVAAKIDAETRVKIDEMNKMVQIQKEAVIKDILNLVYDIKPELHINYRI 504
           ++  AAK +    ++I+ +NK ++  KE +  D   + Y ++ E + N+ +
Sbjct: 3   KKAKAAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,492
Number of Sequences: 59808
Number of extensions: 381400
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)