Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A02
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    47   1e-05
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    30   1.4  
Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical...    27   9.9  
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    27   9.9  
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical...    27   9.9  
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    27   9.9  
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 38/69 (55%)
 Frame = -2

Query: 695 ANSKSLKPSTWATREGVAAKIDAETRVKIDEMNKMVQIQKEAVIKDILNLVYDIKPELHI 516
           A  K+ +     T+E + +KI  +T  +I  M + V   K+AVI  +L LV DIKPELH 
Sbjct: 53  AEFKAFEQQYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHH 112

Query: 515 NYRIA*VIH 489
           N  +   +H
Sbjct: 113 NLTLQKKLH 121


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 550 LRMSLITASFWICTILFISSIFTLVSASIFAATPSRVAHVLGFKLFELA--LTFL 708
           +RMS+++ S  +CT+  +SS+  LV +  +AA+ +     L   L E    +TFL
Sbjct: 2   IRMSVVSISLVLCTLSLVSSLNILVHSPAYAASHTNFMARLADTLTEAGHNVTFL 56


>Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical
           protein T04H1.2 protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 668 TWATRE--GVAAKIDAETRVKIDEMNKMVQIQKEAVIKDILNLV 543
           TWATRE  G+ A ++    V I +M+ + +   + +IKD+ NLV
Sbjct: 289 TWATREHLGLIAALNIPMFVLITKMDLVDRQGLKKIIKDVSNLV 332


>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6c protein.
          Length = 1245

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 259 LIPLDITCVFIVRLVFALNINQLGIIPIKYLKIRL 155
           L+P  +T +FI+R+   L+I+  G++  + L I L
Sbjct: 879 LLPWPVTNIFIIRVFRLLDISDNGLLTFRDLAINL 913


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 259 LIPLDITCVFIVRLVFALNINQLGIIPIKYLKIRL 155
           L+P  +T +FI+R+   L+I+  G++  + L I L
Sbjct: 879 LLPWPVTNIFIIRVFRLLDISDNGLLTFRDLAINL 913


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 259 LIPLDITCVFIVRLVFALNINQLGIIPIKYLKIRL 155
           L+P  +T +FI+R+   L+I+  G++  + L I L
Sbjct: 879 LLPWPVTNIFIIRVFRLLDISDNGLLTFRDLAINL 913


>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6c protein.
          Length = 1245

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 259 LIPLDITCVFIVRLVFALNINQLGIIPIKYLKIRL 155
           L+P  +T +FI+R+   L+I+  G++  + L I L
Sbjct: 879 LLPWPVTNIFIIRVFRLLDISDNGLLTFRDLAINL 913


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 259 LIPLDITCVFIVRLVFALNINQLGIIPIKYLKIRL 155
           L+P  +T +FI+R+   L+I+  G++  + L I L
Sbjct: 879 LLPWPVTNIFIIRVFRLLDISDNGLLTFRDLAINL 913


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 259 LIPLDITCVFIVRLVFALNINQLGIIPIKYLKIRL 155
           L+P  +T +FI+R+   L+I+  G++  + L I L
Sbjct: 879 LLPWPVTNIFIIRVFRLLDISDNGLLTFRDLAINL 913


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,821
Number of Sequences: 27780
Number of extensions: 303193
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)