Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A02
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21310.1 68416.m02692 expressed protein contains Pfam profile...    30   1.3  
At1g67140.1 68414.m07638 expressed protein                             29   4.0  
At1g51770.1 68414.m05834 hypothetical protein contains Pfam prof...    29   4.0  
At5g51050.1 68418.m06328 mitochondrial substrate carrier family ...    28   5.3  
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH...    28   5.3  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   5.3  
At4g10620.1 68417.m01736 expressed protein                             28   7.0  
At4g02405.1 68417.m00325 expressed protein                             27   9.2  

>At3g21310.1 68416.m02692 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 383

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 262 ALIPLDITCVFIVRLVFALNINQLGIIPIKYLKIR 158
           AL+P+ +  VF++  V  L I+ + +  IKYLKI+
Sbjct: 25  ALLPMRVLQVFLLFFVLVLGISVISMHMIKYLKIQ 59


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 534 DVIHQVEDVFDNSLFLDLHHFVHLINLHSGLGVDFRSDTFPCC 662
           +V H+ ++ FD+++   L HF+ L+ + + L +   ++  P C
Sbjct: 369 EVPHEFKEFFDDTVGAALSHFLDLVRVEAALTLRALAEVDPTC 411


>At1g51770.1 68414.m05834 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 399

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 262 ALIPLDITCVFIVRLVFALNINQLGIIPIKYLKIR 158
           AL+PL +  + ++ LV  L I+ + I  IK+LKI+
Sbjct: 23  ALLPLRLLQILLLFLVLTLGISVVSIHMIKFLKIQ 57


>At5g51050.1 68418.m06328 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 487

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 689 SKSLKPSTWATREGVAAKIDAETRVKIDEMNKMVQIQK-EAVIKDILNLVY 540
           SK +K S +    G+A          +D +  ++QIQK +A I++ + L++
Sbjct: 203 SKHIKRSNYFIAGGIAGAASRTATAPLDRLKVLLQIQKTDARIREAIKLIW 253


>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
           (CHX11) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 671

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  Y*HTSNNIQFKDYIYSVLFINIYFFTFVP 155
           Y H S+ I ++D +  ++F  I FF F P
Sbjct: 118 YIHVSHAIAYRDLVAVIIFFLIVFFVFKP 146


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = -2

Query: 644 AAKIDAETRVKIDEMNKMVQIQKEAVIKDILNLVYD---IKPELH 519
           AA++    R K++ MNK++  + + + K + NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At4g10620.1 68417.m01736 expressed protein
          Length = 597

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 689 SKSLKPSTWATREGVAAKIDAETRVKIDE 603
           SK LKP T+  +EG    I    R+ IDE
Sbjct: 396 SKELKPRTYRIKEGYTVHIGGLMRLDIDE 424


>At4g02405.1 68417.m00325 expressed protein
          Length = 333

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 171 YLIGMIPS*LIFNAKTKRTMNTQVISNGINAMAVIFLSVISKLYVMCYQ*IHFITV 338
           YLIG +P+ +   +   + M    +SNG     V +  + + L V+ +  ++  TV
Sbjct: 242 YLIGELPTNITLQSDLSKWMEKLFMSNGFRVKIVSYEEIAASLGVVLHSPVNHDTV 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,515
Number of Sequences: 28952
Number of extensions: 267230
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)