Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A01
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   2.2  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   5.2  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = -2

Query: 434  LINIKSRSEISELCIREYFLSFIFKREMNTIKLI*YFICKLIEKMVTVVEIKKLCDVT 261
            L+ I ++++  E CI      F++ RE+   KL    + K IEK ++V +++K  D+T
Sbjct: 1036 LMEILNKNDCIESCI------FVY-RELAEYKLALSHVSKYIEKSMSVFDLEKSDDMT 1086


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 461 YTYKNGTLVLINIKSRSEISELCIREYFLSF 369
           YT   G L+L+N+ + S I  L I  +F+S+
Sbjct: 395 YTIIVGLLMLVNVTAISSIFNLAIIAFFISY 425


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 96  DERHRLYNLFNLYVSKTLFIKRRTIAKTKVVLFQSGPEPSHHRF 227
           ++R  L  + N YVSK+L +K    A+ + +  Q+G  PS   F
Sbjct: 5   NKRVALQEISN-YVSKSLNVKGWVNAQVREISLQNGCSPSDKHF 47


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 268 SHNFFISTTVTIFSISLHIKY*INLIVFISRLK---IKLRKYSRIQSSDISERD 420
           S+N F+S +  +  +   I     ++  +SRLK   +K  K+S+I   +  E D
Sbjct: 112 SYNTFVSVSENLNKLKSSIGAIFGIVSLLSRLKRLVLKFFKHSKIDEMNSQEYD 165


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 379 KYSRIQSSDISERDFILIKTKVPXXXXXXXXXXXXXXXSEKIK*YFTD 522
           KY R+Q   ++E DFIL+K K+                + +++ YF +
Sbjct: 17  KYYRLQKL-VTEDDFILLKQKLTEQLPTTFRITASIPHATQVRDYFIE 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,855
Number of Sequences: 5004
Number of extensions: 36788
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)