Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A01
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        29   3.1  
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   27   9.4  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  27   9.4  

>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 214  VTIDFTMDIPP*FQSLVTSHNFFISTTVTIFSISLHIK 327
            V+++  MD+ P    ++ ++ +   TT+ +FS+SL+ K
Sbjct: 2415 VSVEDEMDVTPLNLGMIAAYYYINYTTIELFSVSLNAK 2452


>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 151 SLNGVQLLKPR*FYFKADRNPVTIDFTMDIPP*FQSLVTSHNFFISTT 294
           SL+  QLLKP+    K    P+ IDF  ++P   Q +  + +F  S+T
Sbjct: 63  SLSRSQLLKPKSNRAKRKVTPLVIDFNTNLPDIGQIVRKNLSFLHSST 110


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 102 RHRLYNLFNLYVSKTLFIKRRTIAKTKVVLFQSGPEPSHHRFHNGHTTII 251
           RH LY    +Y   +  I  R    T  +++     P  HR H+ +TT+I
Sbjct: 250 RHHLYTTVIIYTPPSSSIPHRHHLYTTAIIYTPLSSPIPHR-HHLYTTVI 298


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 156 KRRTIAKTKVVLFQSGPEPSHHRF 227
           K +T+A TK++    GPEP H RF
Sbjct: 312 KSQTVAVTKIIT-DWGPEPYHFRF 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,354,032
Number of Sequences: 59808
Number of extensions: 246270
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)