Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A01
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88177-6|AAB42293.1|  446|Caenorhabditis elegans Acetylcholine r...    29   2.0  
U88177-5|AAT48618.1|  515|Caenorhabditis elegans Acetylcholine r...    29   2.0  
AY523512-1|AAR98634.1|  499|Caenorhabditis elegans acetylcholine...    29   2.0  
U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016437-4|AAB65886.1|  416|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U88177-6|AAB42293.1|  446|Caenorhabditis elegans Acetylcholine
           receptor protein17, isoform a protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 187 FYFKADRNPVTIDFTMDIPP*FQSLVTSHNFFI---STTVTIFSISLHIKY*INLIVFIS 357
           ++F   RNP    FT+ IP  F ++VT   FF    ST      +SL +   ++L + + 
Sbjct: 237 YFFAIKRNPSYYLFTLIIPSAFITIVTVIGFFTPHSSTGENTEKVSLGVTALLSLAIILM 296

Query: 358 RLKIKL 375
            +  KL
Sbjct: 297 MVSDKL 302


>U88177-5|AAT48618.1|  515|Caenorhabditis elegans Acetylcholine
           receptor protein17, isoform b protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 187 FYFKADRNPVTIDFTMDIPP*FQSLVTSHNFFI---STTVTIFSISLHIKY*INLIVFIS 357
           ++F   RNP    FT+ IP  F ++VT   FF    ST      +SL +   ++L + + 
Sbjct: 237 YFFAIKRNPSYYLFTLIIPSAFITIVTVIGFFTPHSSTGENTEKVSLGVTALLSLAIILM 296

Query: 358 RLKIKL 375
            +  KL
Sbjct: 297 MVSDKL 302


>AY523512-1|AAR98634.1|  499|Caenorhabditis elegans acetylcholine
           receptor, nicotinic,alpha 9 like (58.1 kD) alternative
           variant a protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 187 FYFKADRNPVTIDFTMDIPP*FQSLVTSHNFFI---STTVTIFSISLHIKY*INLIVFIS 357
           ++F   RNP    FT+ IP  F ++VT   FF    ST      +SL +   ++L + + 
Sbjct: 221 YFFAIKRNPSYYLFTLIIPSAFITIVTVIGFFTPHSSTGENTEKVSLGVTALLSLAIILM 280

Query: 358 RLKIKL 375
            +  KL
Sbjct: 281 MVSDKL 286


>U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical
           protein C10G8.2 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -2

Query: 470 KKNYTYKNGTLVLINIKSRSEI---SELCIREYFLSFIFKREMN-TIKLI*YF 324
           K  YTYK+ T +LI     S I   + +C ++ + SF  K++ N  IK I Y+
Sbjct: 145 KVEYTYKSTTRLLIGKTCSSNICPLNAMCHQKKYFSFCCKKKYNLLIKDILYY 197


>AF016437-4|AAB65886.1|  416|Caenorhabditis elegans Hypothetical
           protein F13H6.5 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 72  MLVCSLAADERHRLYNLFNLYVSKTLFIKRRTIAKTKVVLFQSGPEPSHH 221
           MLVC++   ++    NL   +  +   + R T+A T   LF  GP    H
Sbjct: 270 MLVCTVLIIKKFTFKNLGETFSQRRKCVIRMTVATTLTHLFFEGPATLTH 319


>Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK1037.8 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 253 QSLVTSHNFFISTTVTIF-SISLHIKY*INLIVFISRLKIKLRKYSRIQSSDISER 417
           +SL+   NF+    V +  +++ ++ + + +IVF+  LK+KL + S+   S ++ R
Sbjct: 176 KSLIFVINFYEKGWVKLAGNLTTYVLF-VEIIVFVVALKVKLNRISKASMSSVTLR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,330,045
Number of Sequences: 27780
Number of extensions: 201684
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)