Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_A01
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.62 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.82 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 84  SLAADERHRLYNLFNLYVSKTLFIKRRTIAKTKVVLFQSGPEPSHHRFHNGHTTIIS 254
           S+  + R  LY  F+L +S   F  R T  + K +      +P H  +     TIIS
Sbjct: 251 SINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAMFLVVTAQPVHSAYKAPEETIIS 307


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 126 NLY-VSKTLFIKRRTIAKTKVVLFQSGPE 209
           +LY  +K + IK   IAK K++L   GPE
Sbjct: 571 SLYDTTKPIDIKYSKIAKKKMMLMNMGPE 599


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 224  ISQWTYHHNFN 256
            +S W YHHN N
Sbjct: 1674 MSTWGYHHNVN 1684


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 198 SGPEPSHHRFHNGHTTI 248
           S P P HH   +GH+ I
Sbjct: 410 STPGPHHHTMGHGHSHI 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,596
Number of Sequences: 438
Number of extensions: 2766
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)