Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_A01
(522 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63660.2 68414.m07204 GMP synthase [glutamine-hydrolyzing], p... 29 1.4
At1g63660.1 68414.m07203 GMP synthase [glutamine-hydrolyzing], p... 29 1.4
At4g14390.1 68417.m02219 ankyrin repeat family protein contains ... 28 3.3
At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family prot... 28 3.3
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof... 28 3.3
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 28 4.4
At5g39500.1 68418.m04783 pattern formation protein, putative sim... 27 7.7
At1g16780.1 68414.m02016 vacuolar-type H+-translocating inorgani... 27 7.7
>At1g63660.2 68414.m07204 GMP synthase [glutamine-hydrolyzing],
putative / glutamine amidotransferase, putative similar
to SP|P38625 GMP synthase [glutamine-hydrolyzing] (EC
6.3.5.2) (Glutamine amidotransferase) (GMP synthetase)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00117: glutamine amidotransferase class-I
Length = 434
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 51 TALVLAFMLVCSLAADERHRLYNLFNLYVSKTLFIKRRTIAKTKVVLFQSGPEPSH 218
T L+L + + R R N+F+L +S T +K T +VV+ GP H
Sbjct: 10 TVLILDYGSQYTHLITRRIRSLNVFSLVISGTSSLKSITSYNPRVVILSGGPHSVH 65
>At1g63660.1 68414.m07203 GMP synthase [glutamine-hydrolyzing],
putative / glutamine amidotransferase, putative similar
to SP|P38625 GMP synthase [glutamine-hydrolyzing] (EC
6.3.5.2) (Glutamine amidotransferase) (GMP synthetase)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00117: glutamine amidotransferase class-I
Length = 534
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 51 TALVLAFMLVCSLAADERHRLYNLFNLYVSKTLFIKRRTIAKTKVVLFQSGPEPSH 218
T L+L + + R R N+F+L +S T +K T +VV+ GP H
Sbjct: 10 TVLILDYGSQYTHLITRRIRSLNVFSLVISGTSSLKSITSYNPRVVILSGGPHSVH 65
>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
Pfam profile: PF00023 ankyrin repeat
Length = 694
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 198 SGPEPSHHRFHNGHTTIISIF 260
SG P H H+GHTTI+ F
Sbjct: 165 SGQTPLHVAAHSGHTTIVEAF 185
>At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL6 (GI:15054390), EXL1
(GI:15054382) [Arabidopsis thaliana]; contains Pfam
profile PF00657: Lipase/Acylhydrolase with GDSL-like
motif
Length = 261
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 129 LYVSKTLFIKRRTIAKTKVVLFQSGPEPSHHRFHNGHTTIISIFGDVT*FFY--LDDGDH 302
L +SK + + TI K F++ E H H+ T+I + D FFY L D +
Sbjct: 142 LSLSKQVDLFEETIEKHLKTNFKTPYELREHLAHSLFMTVIGV-NDYA-FFYTRLTDAND 199
Query: 303 FLYKLTYKILD*FNRIH 353
F +L +K L ++H
Sbjct: 200 FADELLHKFLKKIEKLH 216
>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
PF03794: Domain of Unknown function
Length = 980
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 21 KLGSCRSGRVTALVLAFM---LVCSLAADERHRLYNLFNLYVSKTLF 152
K+ +C GR++ +L M L+ SL DE+H + +L+ KT+F
Sbjct: 765 KIIACMLGRISGEILQDMIPWLMESLIPDEQHAVMSLWRQATRKTMF 811
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 470 KKNYTYKNGTLVLINIKSRSEISELCIREYFLSFIFKREMNTIK 339
KK Y YK GT+ L I+ + ++L IR+ + K ++K
Sbjct: 32 KKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLK 75
>At5g39500.1 68418.m04783 pattern formation protein, putative
similar to SP|Q42510 Pattern formation protein EMB30
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1443
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -1
Query: 261 QRLKLWWYVHCEIYGD---WVPVRFEIK 187
+R + +W V CE YGD WVP ++K
Sbjct: 532 ERYEEFWTVRCENYGDPNFWVPFVRKVK 559
>At1g16780.1 68414.m02016 vacuolar-type H+-translocating inorganic
pyrophosphatase, putative similar to vacuolar-type
H+-translocating inorganic pyrophosphatase GI:6901676
from [Arabidopsis thaliana]
Length = 802
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 71 YAGMFISGRRTSPIV*SIQFVCI 139
+ G+F G RTSPI+ + VCI
Sbjct: 54 FGGIFYMGARTSPIIVFVFVVCI 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,399,095
Number of Sequences: 28952
Number of extensions: 177056
Number of successful extensions: 313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -