Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P24
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0503 - 22779025-22779397,22779602-22779627                       27   5.5  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    27   7.2  
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131...    27   7.2  
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654...    26   9.6  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    26   9.6  
09_05_0018 - 20098965-20099705                                         26   9.6  
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781     26   9.6  
03_01_0031 + 292335-292844                                             26   9.6  

>01_05_0503 - 22779025-22779397,22779602-22779627
          Length = 132

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 128 RRTDARMWPTGSRMATTHQKTW*RSS*SLEGN 33
           R T    WP+  +  TT++ T  RS+  L+GN
Sbjct: 5   RHTCGWRWPSARKFPTTYRSTITRSTRELQGN 36


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  PPKITTTFTRSSGAW*PFENPLATSGHRF 124
           PP    TF RSS +    +  L+ SGHRF
Sbjct: 406 PPSGIRTFARSSASSLLLQPKLSNSGHRF 434


>02_03_0387 -
           18412064-18412144,18412280-18412361,18412922-18413142,
           18413387-18413745,18413834-18414443,18414546-18414605,
           18414685-18414751,18414843-18414936,18415012-18415125,
           18415242-18415308,18415386-18415551,18416587-18417080
          Length = 804

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 232 RDRIRNERDPQKNRSDRDCQKN 167
           RDR   ERD ++ R DRD +K+
Sbjct: 81  RDRGEAERDKERERKDRDKEKS 102


>12_02_1157 +
           26565040-26565081,26565189-26565262,26565343-26565460,
           26565547-26565617,26565704-26565869,26565946-26566145,
           26566669-26566880,26567404-26567522,26567952-26568053,
           26568144-26568253,26568340-26568427,26568574-26568606,
           26568635-26568834,26568916-26569120
          Length = 579

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 44  KITTTFTRSSGAW*PFENPLATSGHRFCEQCGRANAT*ILSILLAISVTSVLLRISLIPD 223
           KI+T+F RSS        P+A S H  C+  G +        L + ++ S +   SL+P 
Sbjct: 227 KISTSFGRSS-----IVGPIAQSYHHGCQNSGCSRPERNKEFLFSKALQSWVYPQSLLPA 281

Query: 224 SI 229
           SI
Sbjct: 282 SI 283


>09_06_0371 + 22615809-22617431,22618312-22618422,22619361-22619453,
            22619562-22619661,22619754-22619834,22620774-22621047,
            22621254-22622069,22622921-22623029,22623509-22623602,
            22623881-22623939,22624150-22624197
          Length = 1135

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 16   GYCGHR--FPSKDHDDLHQVFW 75
            GY G++   PS D   LHQ+FW
Sbjct: 1016 GYMGNKVILPSVDCRSLHQIFW 1037


>09_05_0018 - 20098965-20099705
          Length = 246

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 88  WLPRTRRPGEGRRDLWRGTYVRSTRCA 8
           W+   R PG+    LW GTYV +   A
Sbjct: 59  WVCEVRVPGKRGARLWLGTYVTAEAAA 85


>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
          Length = 389

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
 Frame = +3

Query: 54  RPSPGLLVRGSHSRTRWPHP----------GIGSASNVVGLMPLRFYQFFWQ 179
           + SP LL  G H+  RWP             + + ++++     RF + FWQ
Sbjct: 169 KDSPALLGGGEHALARWPRTVFLVGAMTCLAVSATAHLLACHSRRFSRLFWQ 220


>03_01_0031 + 292335-292844
          Length = 169

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 112 GCGQRVLEWLPRTRRPGEGRRDLWRGTYV 26
           GCG+R  EW    RR G  RR  W+  ++
Sbjct: 31  GCGRRWSEWRRWRRRRGWRRRWGWQRRWI 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,493
Number of Sequences: 37544
Number of extensions: 214282
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)