Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P24
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_32445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     28   3.2  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)                  27   7.3  
SB_36464| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +2

Query: 86  PFENPLATS--GHRFCEQC 136
           PF +P+ T   GHRFCE C
Sbjct: 48  PFRDPVQTRDCGHRFCESC 66


>SB_32445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 150 PLRFYQFFWQSRSLRFFCGSRSFLIRSRSETTAVLLTPDS 269
           P  +++ +WQ   L F    R+  IR R + T  + TPD+
Sbjct: 102 PTFYFRQYWQDPRLAFGDSIRAEAIRPRGDFTKKIWTPDT 141


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 117 IGSASNVVGLMPLRFYQFFWQSRSLRFFCGSRSFLIRSRSETTAVL 254
           + + S ++      F    W S+      GS SFL  +RS T+A+L
Sbjct: 592 LNNTSEIISRNTSEFNLSGWISKYKLLLIGSESFLTSTRSSTSAIL 637


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 161 KSKWH*PDHIARRTDARMWPTG 96
           + KWH P  IAR  D R W  G
Sbjct: 39  EGKWHPPGEIARGYDGRNWCYG 60


>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 151 GISPTTLLAEP-MPGCGQRVLEWLPRTRRPGEGRRD 47
           GIS   L  +P +PG   R L+W+    R  E RR+
Sbjct: 67  GISQDQLTGKPYLPGVMARFLDWIKIMVRRAENRRE 102


>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 949

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 305 LMRSHIEITAVLLTPNSITQ*KYCGTRSLP 394
           LM  HI +   LL PN +T  + C T+  P
Sbjct: 215 LMDHHIYLEGTLLKPNMVTAGQSCPTKYTP 244


>SB_36464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 100 RVLEWLPRTRRPGEGRRDLWR 38
           RVL  L  TRR G GR   WR
Sbjct: 81  RVLSLLWSTRRSGSGRMPFWR 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,341,004
Number of Sequences: 59808
Number of extensions: 232806
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)