Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P24
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put...    31   0.37 
At2g14510.1 68415.m01624 leucine-rich repeat protein kinase, put...    28   2.0  
At1g79880.3 68414.m09332 La domain-containing protein contains P...    27   3.4  
At1g79880.2 68414.m09331 La domain-containing protein contains P...    27   3.4  
At1g79880.1 68414.m09333 La domain-containing protein contains P...    27   3.4  
At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase fam...    27   4.5  

>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 886

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 165 DKI*VALARPHCSQNRCPDVANGFSNGYHAPEDLVKVVVI 46
           D++ +  ++P  +Q       +GFS+GY+ P+D++K   I
Sbjct: 217 DRVWIPHSQPEWTQINTTRNVSGFSDGYNPPQDVIKTASI 256


>At2g14510.1 68415.m01624 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 868

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 165 DKI*VALARPHCSQNRCPDVANGFSNGYHAPEDLVKVVVI--FGGEPMS 25
           D++ +  ++P  +Q       +GFS+GY+ P+ +++   I   G EP++
Sbjct: 216 DRVWMPYSQPEWTQINTTRNVSGFSDGYNPPQGVIQTASIPTNGSEPLT 264


>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 357

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 266 FDHAVKLLRISSLLMRSHIEITAVLLTPNSITQ*KYCGT 382
           F++++K+  +SS   + + ++ +V L PN   + ++CGT
Sbjct: 68  FEYSIKMEDVSSFFSQ-YAKVNSVRLPPNIADKRRFCGT 105


>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 345

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 266 FDHAVKLLRISSLLMRSHIEITAVLLTPNSITQ*KYCGT 382
           F++++K+  +SS   + + ++ +V L PN   + ++CGT
Sbjct: 68  FEYSIKMEDVSSFFSQ-YAKVNSVRLPPNIADKRRFCGT 105


>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 399

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 266 FDHAVKLLRISSLLMRSHIEITAVLLTPNSITQ*KYCGT 382
           F++++K+  +SS   + + ++ +V L PN   + ++CGT
Sbjct: 122 FEYSIKMEDVSSFFSQ-YAKVNSVRLPPNIADKRRFCGT 159


>At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 2 AMPBP2 (AMPBP2) GI:20799712
          Length = 603

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 111 DVANGFSNGYHAPEDLVKVVVIFGGEPMSAV 19
           D+A  + +GY   +D +K V+I GGE +S+V
Sbjct: 481 DLAVKYPDGYIEIKDRLKDVIISGGENISSV 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,424,221
Number of Sequences: 28952
Number of extensions: 158154
Number of successful extensions: 457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)