Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P22
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50630.1 68416.m05538 kip-related protein 2 (KRP2) / cyclin-d... 34 0.073
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,... 34 0.073
At4g34440.1 68417.m04894 protein kinase family protein contains ... 33 0.17
At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t... 31 0.68
At3g53440.2 68416.m05898 expressed protein 30 0.89
At3g53440.1 68416.m05897 expressed protein 30 0.89
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At5g53930.1 68418.m06710 expressed protein 29 2.1
At5g48340.1 68418.m05973 expressed protein 28 3.6
At3g52310.1 68416.m05749 ABC transporter family protein contains... 28 3.6
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 28 3.6
At1g18550.1 68414.m02314 kinesin motor protein-related contains ... 28 3.6
At3g02860.2 68416.m00279 expressed protein 28 4.8
At2g32710.2 68415.m04003 kip-related protein 4 (KRP4) / cyclin-d... 28 4.8
At2g32710.1 68415.m04002 kip-related protein 4 (KRP4) / cyclin-d... 28 4.8
At2g30010.1 68415.m03651 expressed protein 28 4.8
At3g02125.1 68416.m00179 hypothetical protein 27 6.3
At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04... 27 8.3
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 27 8.3
At2g01750.1 68415.m00104 expressed protein 27 8.3
>At3g50630.1 68416.m05538 kip-related protein 2 (KRP2) /
cyclin-dependent kinase inhibitor 2 (ICK2) /
cdc2a-interacting protein identical to Cdc2a-interacting
protein (ICK2) (cyclin-dependent kinase inhibitor)
[Arabidopsis thaliana] GI:7160669
Length = 209
Score = 33.9 bits (74), Expect = 0.073
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 116 LDTRSLRVRGVTTLEGVRRNLFGCV---DREENRRIVERELARQLELDSQRWGFDFANEK 286
+D+ S+ V V + +R++L V + E+ ++ E++L +L S ++ FDF ++
Sbjct: 136 MDSSSVAVEDVESRRRLRKSLHETVKEAELEDFFQVAEKDLRNKLLECSMKYNFDFEKDE 195
Query: 287 PLPGTQRFAW 316
PL G R+ W
Sbjct: 196 PL-GGGRYEW 204
>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 609
Score = 33.9 bits (74), Expect = 0.073
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 335 TIPVALRRSPITIATPKQTAPSKETKVSSPESSKTTKRITDFLKPRKRLSNKGKK-SPGH 511
++PV+ + P+ ++ +T + ++ + S+TT RKR KGK SPG
Sbjct: 140 SVPVSKKEKPLVTSSTDRTLRPSSSNIAHKQQSETTSVTRKQTPERKRSPLKGKNVSPGQ 199
Query: 512 TLKLECVHGTH 544
+ + + G+H
Sbjct: 200 SENSKPMDGSH 210
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 287 PLPGTQRFAWQLVPASTIPVALRRSPITIATPKQTAPSKETKVSSPESSKT 439
P P TQ + P+S+ PV SP T P AP T V+ P +T
Sbjct: 59 PAPPTQETSPPTSPSSSPPVVANPSPQTPENPSPPAPEGSTPVTPPAPPQT 109
>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
synthetase, mitochondrial precursor (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
Length = 709
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 171 GIYLDV-LTERKIDESLKENSRDNWNWIVRDGASISQTRNLYLAHRDS 311
G Y+D LT+RKID+ ++E +N+I+ G + + T + + RD+
Sbjct: 639 GFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDN 686
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 30.3 bits (65), Expect = 0.89
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +2
Query: 284 KPLPGTQRFAWQLVPASTIPVALRRSPITIATPKQTAPSKETKV-------SSPESSKTT 442
KP P + ++VP + R + TP+Q P + TK S +SK
Sbjct: 277 KPSPNFWKKVAKMVPGKSAQECFDRVNSALITPRQAQPRRATKTILSTIPQFSLSASKLL 336
Query: 443 KRITDFLKPRKRLSNKGKKSPGHTLK 520
K + K R+R +N KK H L+
Sbjct: 337 KPNSPKTKIRQRRNNLSKKVVRHLLE 362
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 30.3 bits (65), Expect = 0.89
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +2
Query: 284 KPLPGTQRFAWQLVPASTIPVALRRSPITIATPKQTAPSKETKV-------SSPESSKTT 442
KP P + ++VP + R + TP+Q P + TK S +SK
Sbjct: 277 KPSPNFWKKVAKMVPGKSAQECFDRVNSALITPRQAQPRRATKTILSTIPQFSLSASKLL 336
Query: 443 KRITDFLKPRKRLSNKGKKSPGHTLK 520
K + K R+R +N KK H L+
Sbjct: 337 KPNSPKTKIRQRRNNLSKKVVRHLLE 362
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +2
Query: 155 LEGVRRNLFGCVDREENRRIVERELARQLELDSQRWGFDFANEKPLPGTQRFAWQLVPAS 334
+ G+RR + + ++++ V+ L RQ + R+GF F+N P ++ + +
Sbjct: 2 MNGLRRTFWSSIHKKKDNNRVDDSLDRQKPTTTSRFGF-FSNPS-TPRSETRPDSVTCSP 59
Query: 335 TIPVALRRSPITIATPKQTAPS 400
TIP S I+TP + P+
Sbjct: 60 TIP-CQSWSATAISTPSPSLPA 80
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +2
Query: 155 LEGVRRNLFGCVDREENRRIVERELARQLELDSQRWGFDFANEKPLPGTQRFAWQLVPAS 334
+ G+RR + + ++++ V+ L RQ + R+GF F+N P ++ + +
Sbjct: 2 MNGLRRTFWSSIHKKKDNNRVDDSLDRQKPTTTSRFGF-FSNPS-TPRSETRPDSVTCSP 59
Query: 335 TIPVALRRSPITIATPKQTAPS 400
TIP S I+TP + P+
Sbjct: 60 TIP-CQSWSATAISTPSPSLPA 80
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 29.1 bits (62), Expect = 2.1
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Frame = +2
Query: 134 RVRGVTTLEGVRRNLFGCVDREENRRIVERELARQLELDSQRWGFDFANEKPLPGTQRFA 313
R RGVT G+ + V E +I ++ Q ++ D A K L +++
Sbjct: 291 RFRGVTQKSGIAKKEVSSVSEGEPMQIESEKVESQDHDLMEQKLCDSAVSKDLENSEKIL 350
Query: 314 WQLVPASTIPVALRRSPITIATPKQTAPSKETKVSSPESSKTTKR--ITDFL-KPRKRLS 484
++ AL S +Q+ + + KVSS SS TTKR + L K L+
Sbjct: 351 -HVINVKESGTALANS--ASQQDQQSGDTAKVKVSSGLSSCTTKRKLVRPVLSKDSLNLA 407
Query: 485 NKGKKSPGHTLKLECVHGTHI 547
+K + S + E + G+ +
Sbjct: 408 SKKEASGSQDAEAESIDGSTV 428
>At5g48340.1 68418.m05973 expressed protein
Length = 510
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 191 QHIQINSFLLPRAWSLHGRVAT*CPTLSSW 102
+HIQ+ L +W++H R++ C T SW
Sbjct: 364 KHIQVIKLLGLLSWTIHFRLSEECQTPDSW 393
>At3g52310.1 68416.m05749 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 737
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 257 SDYPIPIVSRVLFQRFVYFPLGQHIQINSFLL 162
SD P+ ++ VLF VYF G ++ SF L
Sbjct: 584 SDLPLDLILPVLFLVVVYFMAGLRLRAESFFL 615
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles
PF00612: IQ calmodulin-binding motif, PF02179: BAG
(Apoptosis regulator Bcl-2 protein) domain
Length = 1043
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 368 TIATPKQTAPSKETKVSSPESSKTTKRIT 454
+++ PK+ SKETK+++P SSK + T
Sbjct: 473 SVSHPKRMEKSKETKIAAPLSSKKAESRT 501
>At1g18550.1 68414.m02314 kinesin motor protein-related contains
similarity to kinesin-related protein GI:4493964 from
[Plasmodium falciparum]
Length = 799
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 197 EENRRIVERELARQLELDSQRWGFDFANEKPLPGTQ-RFAWQLVPASTIPVALRRSPITI 373
+E RRIV R R E + + P+ + R W + A+T P RR +
Sbjct: 643 KETRRIVTRGSLRPKEKEKELKSPSHRFASPVAAAKKRSFWDITVANTSPALDRRKTRSH 702
Query: 374 ATPKQTAPSK 403
Q APSK
Sbjct: 703 GLVHQEAPSK 712
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 27.9 bits (59), Expect = 4.8
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Frame = +2
Query: 5 VLGEDSVADANRCSVSDSVEMSALSVRAPGLQATTTVLDTRSLRVRGVT------TLEGV 166
VL +S+ D ++ S + +L A G+Q + +TR ++ + T G+
Sbjct: 45 VLKSESLWDVHQASRKHHEAIDSLKASAAGVQRGSKPAETRPTKIEALAKSSNSQTSSGL 104
Query: 167 RRNLFGCVDREENRRIVERELARQLELDSQRWGFDFANEK-PLP 295
N F +RE R VE ++ LE G + K PLP
Sbjct: 105 PPNFF--ENREPARAEVEPAKSKNLEQSKHTIGSETNKSKGPLP 146
>At2g32710.2 68415.m04003 kip-related protein 4 (KRP4) /
cyclin-dependent kinase inhibitor 4 (ICK4) nearly
identical to cyclin-dependent kinase inhibitor 4 (krp4)
[Arabidopsis thaliana] GI:14422291
Length = 286
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 254 QRWGFDFANEKPLPGTQRFAWQLV 325
+++ FD NE+PLPG RF W V
Sbjct: 263 EKYNFDPVNEQPLPG--RFEWTKV 284
>At2g32710.1 68415.m04002 kip-related protein 4 (KRP4) /
cyclin-dependent kinase inhibitor 4 (ICK4) nearly
identical to cyclin-dependent kinase inhibitor 4 (krp4)
[Arabidopsis thaliana] GI:14422291
Length = 289
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 254 QRWGFDFANEKPLPGTQRFAWQLV 325
+++ FD NE+PLPG RF W V
Sbjct: 266 EKYNFDPVNEQPLPG--RFEWTKV 287
>At2g30010.1 68415.m03651 expressed protein
Length = 398
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 360 RPLQSRHQNKLHHPRR 407
RP+QS H N + HPRR
Sbjct: 29 RPIQSNHSNFVKHPRR 44
>At3g02125.1 68416.m00179 hypothetical protein
Length = 355
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 174 IYLDVLTERKIDESLKENSRDNWNWIVRDGASISQTRNLYLAHRDSRGNLYQPLLFPLL 350
I + L E+++ E++KEN ++ N IV SIS D+ N FPLL
Sbjct: 210 IEAEALVEKEVIETVKENKPEDSNSIVSHSPSIS-------CRSDTSNNSIGSFAFPLL 261
>At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 622
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +3
Query: 180 LDVLTERKIDESLKENSRDNWNWI 251
++V+ ER++DE +KE + ++W+
Sbjct: 591 INVIVERRVDEMVKELPENEFDWL 614
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/89 (19%), Positives = 36/89 (40%)
Frame = -3
Query: 393 AVCFGVAIVMGDLLRATGIVEAGTSCHANLCVPGKGFSFAKSKPHXXXXXXXXXXXXXST 214
A+C+G +++ LLR ++ GT + G+ + ++
Sbjct: 299 AICYGAKLMIPGLLRFENDIDVGTEV-VLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKI 357
Query: 213 IRLFSSRSTHPNKFLLTPSSVVTPRTRSD 127
R+ R T+P K+ L P + + + +D
Sbjct: 358 KRVVMDRDTYPRKWGLGPRASMKKKLIAD 386
>At2g01750.1 68415.m00104 expressed protein
Length = 629
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 104 TTTVLDTRSLRVRGVTTLEGVRRNLFGCVDREENRRIVERELARQLELDSQRWGFDFANE 283
T TV + + G T VR + E RRI++RELAR ++ + R ANE
Sbjct: 273 TQTVRELEEAVLAGGTAANAVRDYQRKFQEMNEERRILDRELAR-AKVSASRVATVVANE 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,305
Number of Sequences: 28952
Number of extensions: 256729
Number of successful extensions: 929
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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