Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P21
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   1.5  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   2.7  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   6.2  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 3   KQNIDIIDFNLTREEVAKLSQFNSNY 80
           K+N D+ DF +++E++ KL   + +Y
Sbjct: 239 KENGDVFDFEISKEDMEKLYNLDEDY 264


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 386 IKTLFYPYYKIVTENPNYLFSTF 454
           ++ + Y YY+ V  NPN L S F
Sbjct: 389 LREILYDYYEHVKNNPNTLISQF 411


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 196 PQSAVRHLIKILIRQNVSLLFEFIFVYNN*SEEKCLRKHFIFIPNS 333
           P+  +R  I+++  +  SLLF++  V+   S ++      + IPNS
Sbjct: 258 PELYLRRYIQVIRDRAFSLLFQYQSVFGESSNDRLNAAGTVDIPNS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,985
Number of Sequences: 5004
Number of extensions: 45486
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)