Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P21
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122...    29   2.1  
04_04_0034 + 22298636-22298952,22299057-22299300,22299395-222995...    29   2.7  
10_01_0066 + 848523-849269,849520-849741                               27   8.3  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           27   8.3  
02_02_0713 + 13209130-13209691,13209731-13209850,13209896-132103...    27   8.3  

>02_01_0179 -
           1227573-1227803,1227916-1228138,1228159-1228185,
           1228519-1228651,1228748-1228865,1229357-1229451,
           1229886-1230048
          Length = 329

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 3   KQNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKWY 107
           ++N  + DF ++ E++ K+   +  YR   PAK++
Sbjct: 289 QENFAVFDFAISDEDMEKMRSIDRKYRTNQPAKFW 323


>04_04_0034 +
           22298636-22298952,22299057-22299300,22299395-22299574,
           22300819-22300842,22301055-22301285
          Length = 331

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 3   KQNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKWYPHPYFPFEKKNLTLAEI 158
           KQN++I D+ LT+E+  K+SQ     ++ T A+ +  P   F   +L+  EI
Sbjct: 279 KQNLEIFDWELTKEDRLKISQIPQK-KIVTAARMF-SPDGEFASVDLSDMEI 328


>10_01_0066 + 848523-849269,849520-849741
          Length = 322

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 3   KQNIDIIDFNLTREEVAKLSQ 65
           K+N+DI D+ LT EE  K+S+
Sbjct: 273 KENLDIFDWELTEEERDKISK 293


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 24  DFNLTREEVAKLSQFNSNYRLRTP-AKWYPHPYFPFEKKNLTLAE 155
           +FN+ RE+V+K +  +S Y+L+   AK Y    F    ++  L+E
Sbjct: 13  EFNIMREKVSKQTWLDSIYKLKEKWAKSYMRNVFTLGMRSTQLSE 57


>02_02_0713 +
           13209130-13209691,13209731-13209850,13209896-13210314,
           13210485-13210750,13211381-13211620,13212084-13212876
          Length = 799

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 36  TREEVAKLSQFNSNYRLRTPAKWY-PHPYF 122
           TREE   +   N+ YR +    WY P PY+
Sbjct: 57  TREEAMYMGNNNNGYRPQEGQGWYLPRPYY 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,083,955
Number of Sequences: 37544
Number of extensions: 210422
Number of successful extensions: 338
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)