Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P21
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 44 1e-04
AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical ... 35 0.037
AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical ... 34 0.085
U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 30 1.1
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 29 2.4
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL021171-1|CAA15958.1| 204|Caenorhabditis elegans Hypothetical ... 27 7.4
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 KQNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKW-YPHPYFPF 128
+QNI+I F LT +E+A++ N ++R+ P Y HPYFP+
Sbjct: 277 RQNINIFKFRLTSQEIARIKALNIDFRILNPLLGNYDHPYFPW 319
>AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1a protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.037
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 6 QNIDIIDFNLTREEVAKLSQFNSNYRL-RTPAKWYPHPYFPF 128
+N+ + DF LT EE++K+ N N+R+ + HP+ PF
Sbjct: 271 ENLAVFDFQLTAEEISKIDGINKNWRIVDLSQRDGDHPHCPF 312
>AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1b protein.
Length = 316
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 6 QNIDIIDFNLTREEVAKLSQFNSNYRLRTPA-KWYPHPYFPFEKK 137
+NI +IDF L+ EE+ + N +RL P+ + H YF F ++
Sbjct: 271 ENISVIDFQLSAEEIQAIDGVNRGWRLVDPSPRDGDHKYFGFNEE 315
>U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical
protein C07D8.6 protein.
Length = 317
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 3 KQNIDIIDFNLTREEVAKLSQFNSNYRL 86
K+N ++ DF+LT E++AKL + ++ RL
Sbjct: 271 KENFEVFDFSLTEEDIAKLEESKNSQRL 298
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 185 LFAVFYYVLYFS*SKVLFLEWEIRVRIPFRRC 90
LF YY+ + +K F +WEIR IPF RC
Sbjct: 1271 LFCHVYYLRHLC-NKQRFPDWEIRDPIPFLRC 1301
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 185 LFAVFYYVLYFS*SKVLFLEWEIRVRIPFRRC 90
LF YY+ + +K F +WEIR IPF RC
Sbjct: 1271 LFCHVYYLRHLC-NKQRFPDWEIRDPIPFLRC 1301
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 185 LFAVFYYVLYFS*SKVLFLEWEIRVRIPFRRC 90
LF YY+ + +K F +WEIR IPF RC
Sbjct: 1271 LFCHVYYLRHLC-NKQRFPDWEIRDPIPFLRC 1301
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 29.1 bits (62), Expect = 2.4
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 301 LRKHFIFIPNSYKYVFII 354
L++H+IF+PN YK +++
Sbjct: 258 LKQHYIFVPNKYKETYLV 275
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 6 QNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKWYPHPYFPFE 131
+NI DF L+ E++ L+ + RL HP+FP +
Sbjct: 277 ENISTFDFKLSDEDMHTLNSIETRTRLFIADFAVKHPFFPHD 318
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 KQNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKWYP----HPYFPF 128
K+NI+I DFN++ EV L + R W+P HP PF
Sbjct: 273 KENINIFDFNISNAEVNLLEAHERTKQER--LFWWPNVADHPEDPF 316
>AL021171-1|CAA15958.1| 204|Caenorhabditis elegans Hypothetical
protein H04D03.1 protein.
Length = 204
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 200 CGILILFAVFYYVLYF 153
CGILI F +F+ LYF
Sbjct: 111 CGILIAFVIFHIFLYF 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,416
Number of Sequences: 27780
Number of extensions: 245644
Number of successful extensions: 513
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -