Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P21
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21250.1 68415.m02526 mannose 6-phosphate reductase (NADPH-de...    31   0.75 
At2g21260.1 68415.m02530 mannose 6-phosphate reductase (NADPH-de...    30   1.3  
At5g14160.1 68418.m01656 F-box family protein contains F-box dom...    27   7.0  
At2g33190.1 68415.m04066 F-box family protein contains F-box dom...    27   7.0  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    27   9.2  

>At2g21250.1 68415.m02526 mannose 6-phosphate reductase
           (NADPH-dependent), putative 6-phosphate reductase [Apium
           graveolens][GI:1835701], NADP-dependent
           D-sorbitol-6-phosphate dehydrogenase [Malus
           domestica][SP|P28475]
          Length = 309

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   KQNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKWY 107
           ++N  + DF L++E++  +      YR   PAK++
Sbjct: 269 EENFQVFDFELSKEDMEVIKSMERKYRTNQPAKFW 303


>At2g21260.1 68415.m02530 mannose 6-phosphate reductase
           (NADPH-dependent), putative similar to NADPH-dependent
           mannose 6-phosphate reductase [Apium
           graveolens][GI:1835701], NADP-dependent
           D-sorbitol-6-phosphate dehydrogenase [Malus
           domestica][SP|P28475]
          Length = 309

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   KQNIDIIDFNLTREEVAKLSQFNSNYRLRTPAKWY 107
           ++N  + DF L++E++  +     NYR    AK++
Sbjct: 269 EENFQVFDFQLSKEDMEVIKSMERNYRTHQTAKFW 303


>At5g14160.1 68418.m01656 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  DIIDFNLTREEVAKLSQFNSNYRLRTPAKW-YPHPYF 122
           D+  FNL+ ++V +LS  + + R  + A+W +P  YF
Sbjct: 302 DVFVFNLSSQKVQRLSSSSISSRPFSNARWLFPTSYF 338


>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 GLNFSLIVRSATY*NYLLFISQTLTFYAYNHFT 463
           G++ S I   A+Y N++L +   L FY  N FT
Sbjct: 76  GIDLSKIHCLASYGNWILIVDPRLDFYLLNVFT 108


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 210 NSGLWYLNLVC--CFLLCTVFQL 148
           N+  W LN++C  CF  C V+ L
Sbjct: 341 NNEFWLLNVICPFCFSFCRVYDL 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,688
Number of Sequences: 28952
Number of extensions: 202048
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)