Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P20
(201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 1.8
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 24 2.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 24 2.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 24 2.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 3.2
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 24 3.2
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 23 4.2
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 23 5.5
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 23 5.5
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 5.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 23 7.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 22 9.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 22 9.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 22 9.7
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 166 STKRIQVWTQAVCKTLEVI 110
S KRI VW +CK L+ +
Sbjct: 135 SEKRILVWCSCLCKALQYL 153
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 26 WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 124
+WS+ N K R E Y NF++ + T ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 119 RSNNVLLIVGRNCNIFRHG 63
R+N+ L+I G C +FR G
Sbjct: 963 RNNDFLIIYGIGCEVFRLG 981
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +2
Query: 14 HLPFWWSSERYGNLKHRRGEIYYNFYQ 94
H FWWS + NL E+ + +Q
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQ 144
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 3.2
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = +2
Query: 20 PFWWSSERY 46
PFWW+S+R+
Sbjct: 1476 PFWWTSQRH 1484
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 83 NFYQQLTTRYYFERLTNGLGPYLNSLG 163
+F ++L + E +TNG Y+NSLG
Sbjct: 60 SFLEELDDDHLHELVTNGGILYMNSLG 86
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +2
Query: 26 WWSSERYGNLKHRRGEIYYNFYQQL 100
WW G H RG+ NF +++
Sbjct: 644 WWEGFVVGEDDHNRGQFPSNFVREI 668
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 8 HSHLPFWWSSERYGNLKHRRGEI 76
HSHLPF ++ E + +K R G +
Sbjct: 1085 HSHLPFKFTPESF--IKIRNGNV 1105
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 195 SGDSNQFNRRVPREFRYGPK 136
+ S++FN ++P R GP+
Sbjct: 598 NNSSSEFNAQIPMNLRNGPR 617
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 146 YLNSLGTRLLNWLLSP 193
++N TRL NW+L P
Sbjct: 167 FVNCFKTRLSNWMLLP 182
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 41 RYGNLKHRRGEIYYNFYQQLTTR 109
RYG+L+HR +I Y LTT+
Sbjct: 1009 RYGSLEHRYNDIVK--YADLTTQ 1029
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 22.2 bits (45), Expect = 9.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 8 HSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGL 139
H+ LP +ERY N R + ++ FY ++ L +GL
Sbjct: 326 HNLLPPVSVAERYANEFFLRYQSFFYFYPPSVFSNRYQILADGL 369
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 86 FYQQLTTRYYFERLTNGLGPYLNSLGTRL 172
F+ L+ R Y E +GP +N++ R+
Sbjct: 4121 FHTVLSGRTYIEGAETVMGPCMNTIPVRI 4149
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 169 ASTKRIQVWTQA 134
AS KR++VW+QA
Sbjct: 938 ASEKRLRVWSQA 949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,049
Number of Sequences: 5004
Number of extensions: 14646
Number of successful extensions: 51
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -