Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P20
(201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 0.90
07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090 27 2.8
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 26 3.6
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 26 4.8
01_01_0924 + 7301611-7301737,7301890-7302518 26 4.8
03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531 25 6.4
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 25 6.4
11_06_0139 - 20531320-20531433,20532146-20532276,20533031-205333... 25 8.4
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 25 8.4
02_05_0194 - 26627119-26627487,26627606-26627856,26627937-26628063 25 8.4
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 119 ERLTNGLGPYLNSLGTRLLNWLLSPDD 199
ER+ +GLG L+SL T+ W + P+D
Sbjct: 938 ERVNDGLGDDLSSLRTKPTGWDMLPED 964
>07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090
Length = 530
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 58 ASPWRNILQ--FLPTINNTLLLRASYKRLGSIPEFSWYSPIKLVTI 189
A PWRNILQ + P + + + +++L I +Y+P+ T+
Sbjct: 271 AHPWRNILQRRYRPQLTMAIAI-PLFQQLTGINVIMFYAPVLFKTL 315
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 61 SPWRNILQFLP----TINNTLLLRASYKRLGSIPEFSWYSPI 174
SP ++ FL T NN LL + + S P F+WYS +
Sbjct: 669 SPHEHVAHFLAACQDTANNGALLLRQFVQTLSGPAFTWYSKL 710
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 21 LSGGVLRDMVTLSIAVAKYITIST 92
+SGG L +VT +AV +ITI T
Sbjct: 77 ISGGHLNPVVTFGLAVGGHITILT 100
>01_01_0924 + 7301611-7301737,7301890-7302518
Length = 251
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 21 LSGGVLRDMVTLSIAVAKYITI 86
+SGG L VTLS+AV +IT+
Sbjct: 76 VSGGHLNPAVTLSLAVGGHITL 97
>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
Length = 193
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 59 HRRGEIYYNFYQQLTTRYYFE 121
HR G YY+ + T YY+E
Sbjct: 26 HRAGAYYYSSHPTSTNTYYYE 46
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 52 P*ASPWRNILQFLPTINNTLLLRASYKRL 138
P A W+ Q +P +NN L+ + S K L
Sbjct: 434 PYAYAWKGSAQLVPELNNVLIYQPSGKPL 462
>11_06_0139 -
20531320-20531433,20532146-20532276,20533031-20533382,
20533384-20533527,20533726-20533875,20534197-20534204,
20534267-20534471
Length = 367
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 9 TRTCLSGGVLRDMVTLSIAVAKYITISTNN*QHVITSSVLQTAW 140
+ T S GV RD+ T S+ + Y+ I + +L T W
Sbjct: 148 SHTATSIGVRRDVSTRSLVLEPYVAICRTANSIGVREMILLTRW 191
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 41 RYGNLKHRRGEIYYNFYQQLTTRYYFERL-TNGLGPYL 151
RYG+L+H R ++ + L +Y F + NG+ +L
Sbjct: 423 RYGDLRHIRRLRFWPLNKVLVEKYEFSDIDANGMAEFL 460
>02_05_0194 - 26627119-26627487,26627606-26627856,26627937-26628063
Length = 248
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 21 LSGGVLRDMVTLSIAVAKYITIST 92
+SGG L VT +AV +ITI T
Sbjct: 77 ISGGHLNPAVTFGLAVGGHITILT 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,771,338
Number of Sequences: 37544
Number of extensions: 90944
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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