Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P20
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.34 
SB_47911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.59 
SB_27575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    26   5.5  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    25   7.2  

>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +2

Query: 2   YFHSHLPFWW----SSERYGNLKHR-RGEIYYNFYQQLTTRYYFERLTNGLGPYLNSLGT 166
           +F+  L FW+    SS  YG L     GE+   FY +L++  Y E  +   G   +SL  
Sbjct: 421 WFYGELSFWFYGEFSSWFYGELSSSLSGELSSWFYGELSSWLYGELSSWFYGELSSSLSG 480

Query: 167 RLLNWL 184
            L +WL
Sbjct: 481 ELSSWL 486


>SB_47911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 58  ASPWRNILQFLPTINNTLLLRASYK-RLGSIPEFSWYSPI 174
           A+ W+ ILQF P IN+   +  S      S+    WY PI
Sbjct: 64  ANKWKGILQFSPKINHRKSIDKSMSIDRSSLISIDWYWPI 103


>SB_27575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 130 KRLGSIPEFSWYSPIKLVTI 189
           K+ GSIPE  WY  + L+T+
Sbjct: 373 KQFGSIPESFWYICVTLMTV 392


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 104 TRYYFERLTNGLGPYLNSLGTRLLNWLLSPD 196
           T Y + +L N  G YL   G  LLN  L+ D
Sbjct: 697 TEYPYNQLRNRFGTYLTDKGFSLLNRFLTYD 727


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 67  WRNILQFLPTINNTLLLRASYKRLGSIPEFSWYSPIK 177
           WRNI Q L + +  +   A  K LG+     W+  +K
Sbjct: 158 WRNITQRLISKSKKVFYAAKVKSLGNSNISQWWKTVK 194


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 11  SHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGPYLNSL 160
           SH  FW+SS R+     R      +    L +R  + RLT+ LG  + SL
Sbjct: 376 SHSGFWFSSSRFS----RSSSSISDSLSSLRSRASWRRLTDVLGSSMVSL 421


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 32   SSERYGNLKHRR---GEIYYNFYQQLTTRYYFERLTNGLGPYL 151
            + ER GNL+H R    E+   FY  L     FE+   GL P++
Sbjct: 930  NKERAGNLRHHRQEKKELQIPFYYALVA---FEQRFEGLRPFV 969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,666,130
Number of Sequences: 59808
Number of extensions: 109184
Number of successful extensions: 270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 45
effective length of database: 14,130,097
effective search space used: 296732037
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)