Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P20
         (201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...    25   5.6  
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...    25   5.6  
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...    25   5.6  
AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    25   9.8  
AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical...    25   9.8  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    25   9.8  

>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 14  HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 115
           HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical
           protein C48D1.1b protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 9   TRTCLSGGVLRDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVH 146
           TRT LSG +L  ++   +++   I+++           VL TA+ H
Sbjct: 125 TRTSLSGDILECLLKTQLSIPNIISVTEAETSQYNDVRVLNTAYFH 170


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 9   TRTCLSGGVLRDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVH 146
           TRT LSG +L  ++   +++   I+++           VL TA+ H
Sbjct: 260 TRTSLSGDILECLLKTQLSIPNIISVTEAETSQYNDVRVLNTAYFH 305


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 176 LIGEYQENSGMDPSRL*DARSNNVLLIVGRN-CNIFRH 66
           + G+ Q +  M PS+L + ++ NV+ IV  N C+  RH
Sbjct: 47  IFGDKQYSEKMKPSKL-ENKTRNVMKIVSENNCDPIRH 83


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 74  IYYNFYQQLTTRYYFERLTNGLGPYLNSLGTRLLNWLLSPD 196
           I +N YQ +    YF   T  + P+LN       N L  PD
Sbjct: 498 IPFNVYQNIPFNLYFNSYTPFVNPFLNPFPFPFPNNLNVPD 538


>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 5   FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 109
           FH     W +  +YG +K + G     +YN + Q+  R
Sbjct: 173 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 210


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 5   FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 109
           FH     W +  +YG +K + G     +YN + Q+  R
Sbjct: 223 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 260


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 5   FHSHLPFWWSSERYGNLKHRRGEI---YYNFYQQLTTR 109
           FH     W +  +YG +K + G     +YN + Q+  R
Sbjct: 300 FHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWR 337


>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 76  ILQFLPTINNTLLLRASYKRLGSIPE 153
           IL+ L T NN  +L  S+  L ++PE
Sbjct: 75  ILRGLTTFNNVSVLDVSFNSLSALPE 100


>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 76  ILQFLPTINNTLLLRASYKRLGSIPE 153
           IL+ L T NN  +L  S+  L ++PE
Sbjct: 75  ILRGLTTFNNVSVLDVSFNSLSALPE 100


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 79  LQFLPTINNTLLLRASYKRLGSIPEFSWYSP 171
           +QFL ++     L  S   L  +PE+ W  P
Sbjct: 598 IQFLSSLPQLQQLDVSKNELSQLPEYIWLCP 628


>AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.7 protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 59  HRRGEIYYNFYQQLTTRYY-FERLTNGL 139
           H  G ++Y FY  L T +   E+L  GL
Sbjct: 111 HNAGSVHYYFYSALKTMWSPMEKLLRGL 138


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 79  LQFLPTINNTLLLRASYKRLGSIPEFSWYSP 171
           +QFL ++     L  S   L  +PE+ W  P
Sbjct: 596 IQFLSSLPQLQQLDVSKNELSQLPEYIWLCP 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,833,082
Number of Sequences: 27780
Number of extensions: 79177
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)