Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P20
         (201 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    27   1.3  
At5g07910.1 68418.m00914 leucine-rich repeat family protein cont...    27   1.7  
At1g04050.1 68414.m00392 SET domain-containing protein / suppres...    27   2.3  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    26   3.0  
At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family pr...    26   4.0  
At1g36310.1 68414.m04513 expressed protein                             25   5.2  
At3g53030.1 68416.m05845 protein kinase family protein contains ...    25   6.9  
At3g49220.1 68416.m05379 pectinesterase family protein contains ...    25   6.9  
At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil...    25   6.9  
At4g17340.1 68417.m02601 major intrinsic family protein / MIP fa...    25   9.2  
At3g49450.1 68416.m05405 F-box family protein contains F-box dom...    25   9.2  
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    25   9.2  

>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 58  ASPWRNILQFLPTINNTLLLRASYKRLGSIPEFSW 162
           A PW  +L   PT++ +++ R   K   SI EF W
Sbjct: 94  AMPWYTLL---PTVSESMIERGWTKCFASIGEFGW 125


>At5g07910.1 68418.m00914 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 262

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +1

Query: 70  RNILQFLP----TINNTLLLRASYKRLGSIPE 153
           RN+L +LP    ++ N LLL  S  RL S+PE
Sbjct: 123 RNMLIYLPDTIGSLRNLLLLNVSNNRLKSLPE 154


>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
           of variegation related 1 (SUVR1) identical to suppressor
           of variegation related 1 [Arabidopsis thaliana]
           GI:15004614; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA trithorax 3
           (ATX3) partial cds GI:15217142
          Length = 630

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 183 NQFNRRVPREFRYGPKPFV 127
           N+ N +VP  FRY P  FV
Sbjct: 319 NEINEKVPSRFRYMPHSFV 337


>At1g27430.1 68414.m03343 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1531

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 161 QENSGMDPSRL*DARSNNVLLIVGRNCNIFRHGD 60
           + NS +DP+   DA S N +       N F HGD
Sbjct: 719 RRNSQIDPNISLDALSGNRMSQFEHESNFFNHGD 752


>At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 409

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 71  EIYYNFYQQLTTRYYFERLTNGLGPYLNSLGTRL 172
           E+   F+      YY  RL   LG YL   G +L
Sbjct: 174 EVQIGFHPDAGASYYLSRLPGYLGEYLALTGQKL 207


>At1g36310.1 68414.m04513 expressed protein
          Length = 404

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  RRGEIYYNFYQQLTTRYYFERLTNGLG 142
           R+G + YN Y  + +    ERL +G+G
Sbjct: 352 RKGAVVYNRYYHVFSEGELERLASGVG 378


>At3g53030.1 68416.m05845 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 529

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 41  RYGNLKHRRGEIYYNFYQQLTTRYYF-ERLTNGLGPYLNSL 160
           R+G+L+H R   ++   + LT +Y F E+  N L  +L S+
Sbjct: 406 RHGDLRHIRRLRFWPMNKVLTEKYEFSEQDANDLSDFLVSI 446


>At3g49220.1 68416.m05379 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 598

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 47  GNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGPYLNSLGTRLLNW 181
           G   H RG + +N    L T YY E L +G G   + LG R ++W
Sbjct: 518 GGHVHTRGWLEWNTTFALDTLYYGEYLNSGPG---SGLGQR-VSW 558


>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 873

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 80  YNFYQQLTTRYYFERLTNGLGPYLNSLGTRLLNWL 184
           + FY   T+ Y+F  L  G   ++ S+ + LL W+
Sbjct: 497 FGFYAFATSAYFFAGLNGGFMTFVISI-SMLLGWI 530


>At4g17340.1 68417.m02601 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 250

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 21  LSGGVLRDMVTLSIAVAKYITIST 92
           +SGG L   VTL +AV   IT+ T
Sbjct: 77  ISGGHLNPAVTLGLAVGGNITVIT 100


>At3g49450.1 68416.m05405 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 185 VTSLIGEYQENSGMDPSRL 129
           ++S +GEY ENSG  P+ L
Sbjct: 18  ISSSVGEYGENSGTLPTDL 36


>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 157 RIQVWTQAVCKTLEVITC 104
           R+QVW   VC ++ V TC
Sbjct: 27  RVQVWFVRVCSSILVWTC 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,634,354
Number of Sequences: 28952
Number of extensions: 75338
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,070,560
effective HSP length: 46
effective length of database: 10,738,768
effective search space used: 214775360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)