Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P19
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   0.82 
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   3.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   3.3  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   4.4  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   4.4  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.7  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   7.7  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
 Frame = +2

Query: 245 NTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHS---GAMFIDSKINVYEQFK---QDVQ 406
           N  L+++PH   N ++ N  K IG+  G  + H     A F+ S   +  Q K   QD++
Sbjct: 484 NYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDME 543

Query: 407 NTGVSEVNELPWXXXXXXXXXINDFVRSATHEAIDEIVT 523
           +        L W         + D   S       E+VT
Sbjct: 544 SMDAEYYRSLVWILDNDITGVL-DLTFSVEDNCFGEVVT 581


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 88  SVFEEVIVRLQRWTSDESQSRNGKPFRRIW 177
           +  EE +V LQ+  S E   R+ + FR+IW
Sbjct: 6   NALEEKVVELQQSESVEVIKRHFREFRKIW 35


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +2

Query: 53  NAYGKCNDYTAHQFLKRSLYDFNA--GLVTRVNQETESHFVVSGLSAWAILSTLSFGAAE 226
           ++Y +   Y+AH   KR +  F+   GL        E  F++S      I     + A +
Sbjct: 444 DSYAEIMRYSAHDLKKRLMIRFDGEDGL-DYGGLSREFFFLLSHKMFDPIYCLFEYSAVD 502

Query: 227 ETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEH 343
                 N  L+++PH   N ++ N  + IG+  G  + H
Sbjct: 503 ------NYTLQINPHSSINPEHLNYFRFIGRVIGLAIFH 535


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 55  CIREVQRLYGSSVFEEVIVRLQRWTSDESQSRNGKPFR-RIWTISMGNSIDAIVWR 219
           C+ E   +      E++IVR + W   +S +  G  +    + +++ N +   VW+
Sbjct: 54  CVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWK 109


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 414 PVFWTSCLNC 385
           PVFW SCL+C
Sbjct: 229 PVFWISCLSC 238


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 511 INSFVSCRSNEIVYCSRG 458
           +NS VSC+S  I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 511 INSFVSCRSNEIVYCSRG 458
           +NS VSC+S  I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 131 VTRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVL 256
           + R+N+  E  FV+         ST    + E+ FDE++ V+
Sbjct: 125 IVRINEIMEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVI 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,357
Number of Sequences: 5004
Number of extensions: 41639
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)