Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P19
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0991 - 21500143-21500799,21500834-21501172                       30   1.1  
11_06_0181 + 20985960-20987825,20987904-20989169                       29   1.9  
05_03_0488 - 14651532-14652265,14652404-14653988                       29   2.6  
08_01_0095 + 686182-686184,686440-686682,686755-687228                 29   3.4  
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    27   7.8  
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    27   7.8  

>04_03_0991 - 21500143-21500799,21500834-21501172
          Length = 331

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +2

Query: 134 TRVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEI 313
           T V   ++ H  + GL A    + ++F  + +TF     VL     V F  + F   KE+
Sbjct: 154 TVVVPPSDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAARSPV-FRAELFGPSKEL 212

Query: 314 GKNDGGVLEHSGAMFIDSKINVYE 385
           G   GG ++H+     D +   +E
Sbjct: 213 GATTGGAVDHTAIRIDDMEARDFE 236


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 411 VFWTSCLNCS*TFIFESMNIAPECSKTPPSFLPI 310
           VFWT C +C   F++   N    CS     F  I
Sbjct: 167 VFWTICPHCQKRFLYYQRNFLARCSDCGKRFFAI 200


>05_03_0488 - 14651532-14652265,14652404-14653988
          Length = 772

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 356 FIDSKINVYEQFK-QDVQNTGVSEVNELPW 442
           F+D+ +N  E FK QDV  + ++ +N +PW
Sbjct: 387 FVDAILNGLEVFKLQDVNKSNLAGMNPIPW 416


>08_01_0095 + 686182-686184,686440-686682,686755-687228
          Length = 239

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = +2

Query: 59  YGKCNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGL-SAWAILSTLSFGAAEETF 235
           Y     YT  QF    L D  A  +TR+ +     FVV+G+ S   I + L+        
Sbjct: 58  YNTRRRYTPRQFADL-LADRYAAQLTRLYKAGARKFVVAGVGSMGCIPNVLAQSVESRCS 116

Query: 236 DEINTVLRLHPHVCFNRKYFNILKEIGKNDGGVLEHSGAMFIDS 367
            E++ ++     V FN    N+   +G+ DGG L  +  +F+D+
Sbjct: 117 PEVDALV-----VPFNA---NVRAMLGRLDGGGLPGASLVFLDN 152


>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 109 VRLQRWTSDESQSRNGKPFRRIWTISMGNSI 201
           + ++ W+S  S S    P R+ W +S+ N++
Sbjct: 61  IMIKLWSSGGSSSAGRAPLRKYWGVSITNTV 91


>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 258 LSTVLISSKVSSA-APNDSVDRIAHADSPDTTKWLSVS*LTLVTSPALKSYN 106
           L ++   +K ++A A    +   AH D+ +T KW  ++   +VT   L +YN
Sbjct: 10  LRSLAARAKATAAPAARRRMSSSAHDDAHETAKWEKITYAGIVTCTLLAAYN 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,931,063
Number of Sequences: 37544
Number of extensions: 236004
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)