Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P19
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  31   0.65 
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   4.6  
SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)                   27   8.0  

>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 375 FIFESMNIAPECSKTPPSFLPISFKILKYFLLK---HTCGCS 259
           F  E+   A  C K  P+FL  S+K+L YF  K   + CG S
Sbjct: 652 FANEAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGAS 693


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 306 FKILKYFLLKHTCGC 262
           +++++YFLL H CGC
Sbjct: 166 WRLMRYFLLTHLCGC 180


>SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 FKILKYFLLKHTCGCSLSTVLISSKVSSAA 217
           +++++YFLL H CG S  T    S + S A
Sbjct: 98  WRLMRYFLLTHLCGISHRTWCTLSTICSDA 127


>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
          Length = 349

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 306 FKILKYFLLKHTCGCSLSTVL 244
           +++++YFLL H CG   S +L
Sbjct: 62  WRLMRYFLLTHLCGLESSEIL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,367
Number of Sequences: 59808
Number of extensions: 284136
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)