Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P19
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    31   0.76 
Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    29   2.3  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    28   5.3  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    28   5.3  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    27   9.3  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    27   9.3  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    27   9.3  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    27   9.3  

>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 532 FTRCYYFINSFVSCRSNEIVYCSRGSRVIVPR*FINFRNSCIL 404
           F +C  +I S+V+C S +  YC +  R  +P   +   +S I+
Sbjct: 335 FAQCNNYIQSYVNCFSTKCYYCKKHLRQFMPPTVVTRESSPII 377


>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -2

Query: 336 KTPPSFLPISFKILKYFLLKHTCGCSLSTVLISSKVSSAAPNDSVDRIAHADSPDTTKWL 157
           KTP +  P+ F IL   +       +LST+ I   + SAA   S   +A+   P + ++ 
Sbjct: 40  KTPKTLQPVKFSILVMHITCFWLDFNLSTLSIPYLIYSAAAGQSFGILAYLKIPMSFQFY 99

Query: 156 SVS*LTLVTSPAL 118
             +    +  PA+
Sbjct: 100 MGATAVFLLGPAI 112


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 221 AEETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDG 328
           AEETF  I TV  L+ H     +++N L E+G+  G
Sbjct: 260 AEETFSSIRTVHSLNGHKRELDRFYNAL-EVGRQTG 294


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 221 AEETFDEINTVLRLHPHVCFNRKYFNILKEIGKNDG 328
           AEETF  I TV  L+ H     +++N L E+G+  G
Sbjct: 260 AEETFSSIRTVHSLNGHKRELDRFYNAL-EVGRQTG 294


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 258 LSTVLISSKVSSAAPNDSVDRIAHADSPDTTK 163
           +S+V   S     APNDSV+ +A  D  +T K
Sbjct: 614 ISSVAQGSNAPKTAPNDSVNSVAPDDIHETDK 645


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 257 RLHPHVCFNRKYFNILKEIGKNDGGV 334
           R+HPH   + ++ N  +E+ KN+G +
Sbjct: 491 RMHPHTSNSFEFLNCNQEMNKNEGAL 516


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 257 RLHPHVCFNRKYFNILKEIGKNDGGV 334
           R+HPH   + ++ N  +E+ KN+G +
Sbjct: 511 RMHPHTSNSFEFLNCNQEMNKNEGAL 536


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 257 RLHPHVCFNRKYFNILKEIGKNDGGV 334
           R+HPH   + ++ N  +E+ KN+G +
Sbjct: 527 RMHPHTSNSFEFLNCNQEMNKNEGAL 552


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,223
Number of Sequences: 27780
Number of extensions: 224893
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)