Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P19
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identi...    32   0.30 
At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identi...    32   0.30 
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    31   0.40 
At4g08390.2 68417.m01386 L-ascorbate peroxidase, stromal (sAPX) ...    27   8.7  
At4g08390.1 68417.m01385 L-ascorbate peroxidase, stromal (sAPX) ...    27   8.7  

>At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 284

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
 Frame = +2

Query: 68  CNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLSAWAILST--LSFGAAEETFDE 241
           C+    ++F+  S Y+FNAG+   + Q   S  +V GLS   +++T  L+    +  F  
Sbjct: 45  CSMILVNKFVLSS-YNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPV 103

Query: 242 INTVLRLHPHVCFNRKYFNI-LKEIGKNDGGVLEHSGAMFIDSK 370
               + +     F+ KY N+ +  + KN   V+   G M++ +K
Sbjct: 104 NVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNK 147


>At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 333

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
 Frame = +2

Query: 68  CNDYTAHQFLKRSLYDFNAGLVTRVNQETESHFVVSGLSAWAILST--LSFGAAEETFDE 241
           C+    ++F+  S Y+FNAG+   + Q   S  +V GLS   +++T  L+    +  F  
Sbjct: 45  CSMILVNKFVLSS-YNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPV 103

Query: 242 INTVLRLHPHVCFNRKYFNI-LKEIGKNDGGVLEHSGAMFIDSK 370
               + +     F+ KY N+ +  + KN   V+   G M++ +K
Sbjct: 104 NVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNK 147


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 258 LSTVLISSKVSSAAPNDSVDRIAHADSPDTTKW 160
           +S  LI S +++ +PN     ++H DSP++T W
Sbjct: 554 MSENLIHSPITTLSPNSKRVSLSHLDSPESTPW 586


>At4g08390.2 68417.m01386 L-ascorbate peroxidase, stromal (sAPX)
           identical to stromal ascorbate peroxidase [Arabidopsis
           thaliana] gi|1419388|emb|CAA67425
          Length = 372

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 278 FNRKYFNILKEIGKNDGGVLEHSGAMFIDSKINVY-EQFKQD 400
           F+  YF  +KE    D  VL    A+F DS   VY E++  D
Sbjct: 301 FDNSYFKEIKEKRDEDLLVLPTDAAIFEDSSFKVYAEKYAAD 342


>At4g08390.1 68417.m01385 L-ascorbate peroxidase, stromal (sAPX)
           identical to stromal ascorbate peroxidase [Arabidopsis
           thaliana] gi|1419388|emb|CAA67425
          Length = 372

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 278 FNRKYFNILKEIGKNDGGVLEHSGAMFIDSKINVY-EQFKQD 400
           F+  YF  +KE    D  VL    A+F DS   VY E++  D
Sbjct: 301 FDNSYFKEIKEKRDEDLLVLPTDAAIFEDSSFKVYAEKYAAD 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,043
Number of Sequences: 28952
Number of extensions: 202651
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)