Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P18
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 0.77
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 3.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 3.1
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 4.1
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 26 4.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.1
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 5.4
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 25 5.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 7.2
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 7.2
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 7.2
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 9.5
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 0.77
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = -3
Query: 408 NTGSSFKNILNSFGK*SLTMFVPNMFHSL*AYSTMFLLPSESSLFTTRFITSPLPSFSN 232
+TG+ N L+S T ++PN S+ A ST L + S T+ TS +PS S+
Sbjct: 528 STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASS 586
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 3.1
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Frame = +2
Query: 17 KQLRIETSEMILTITVL--SALVTQASLTPLSNLTVAFINYEELSPLNNINSYEQLYDSV 190
++L IE +++ + + S V ++L +S+L E++S + L+D V
Sbjct: 720 EKLNIELLNLLINVVFVTESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKV 779
Query: 191 VVGDYKAAVMKTLRLENDGKGEVINLVVNRLLSEGKRNIVEYAYKLWNMFGTNIVKDHFP 370
G K E++ +V+ V L+S + A+KL + V D
Sbjct: 780 YTGTPK---------ESEAALDVLAWVDKALVSRKHSEGIPLAFKLLDTLNLQNVGDSSV 830
Query: 371 KEFRMFLNEDPVL 409
K + + +DP L
Sbjct: 831 KALSIIIKDDPAL 843
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 17 KQLRIETSEMILTITVLSALVTQAS--LTPLSNLTVAFINY--EELSPLNNINSYEQLYD 184
KQ S+ I + + S + S + L+ T A+I Y EE+ PLN N Y D
Sbjct: 312 KQKVFLQSKQIFCVPINSLMANSDSVDILELTRNTDAYIWYSVEEIDPLNTYNIYYTNED 371
Query: 185 SVVVGD 202
+ +V D
Sbjct: 372 TSIVLD 377
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 323 KLWNMF--GTNIVKDHFPKEFRMFLNEDPVLIINKRDELALKLQ 448
KL N + T +KD+ L+EDP++ + + +E A +LQ
Sbjct: 726 KLGNQYYNDTQWLKDNLDSHLSHTLSEDPLIKVEELEEKAKRLQ 769
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 320 YKLWNMFGTNIVKDHFPKEFRMFLNE--DPVLIINKRDELALKLQLSMDNDG 469
Y+ W + G + K+ ++L E D + I+NKR ALK L + G
Sbjct: 207 YEYWTLKGLR----EYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKG 254
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 59 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 166
+V S T AS TPLS++ +PL ++NS
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 68 SALVTQASLTPLSNLTVAFINYEELSPLNNINS 166
S T AS TPLS++ +PL+++NS
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 59 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 166
+V S T AS TPL+++ +PL ++NS
Sbjct: 345 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 59 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 166
+V S T AS TPL+++ +PL ++NS
Sbjct: 459 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 272 VNRLLSEGKRNIVEYAYKLWNMFGTNIVKDHFPKEF 379
V+RLL KRN+ + + + + NI++++ KEF
Sbjct: 117 VDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQKEF 152
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 394 VQKHSKLFWEVIFDY 350
V KH KLFW V DY
Sbjct: 4 VGKHVKLFWNVYSDY 18
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 401 PVLIINKRDELALKLQLSMD 460
PV+++NK D L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 401 PVLIINKRDELALKLQLSMD 460
PV+++NK D L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 308 VEYAYKLWNMFGTNIVKDHFPKEFR 382
V+ A W TN+ +D F KE+R
Sbjct: 324 VDEALVFWRKSFTNVTEDKFNKEYR 348
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 125 INYEELSPLNNINSYEQLYDSVV 193
+N ++ L +INS E LYDS V
Sbjct: 21 LNDAKIKSLTSINSAEYLYDSFV 43
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 117 LHLLTTKSFRHSITSTLTN 173
+ +L ++ RHS+TST+TN
Sbjct: 284 IEVLYMENSRHSVTSTITN 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,275
Number of Sequences: 5004
Number of extensions: 37004
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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