Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P18
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    30   1.0  
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354     29   2.4  
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    29   3.1  
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     27   9.6  
05_01_0150 + 1000613-1001275                                           27   9.6  

>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -3

Query: 381 LNSFGK*SLTMFVPNMFHSL*AYSTMFLLPSE 286
           LN+ GK  LT FVPN  H L   STM +L ++
Sbjct: 183 LNTNGKYRLTEFVPNHNHQLATASTMHMLKAK 214


>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
          Length = 847

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 128 NYEELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLENDGKGEVINLVVNRLLSEGKRNI 307
           N+  LS  + + SY +  + +++ DY   VM    ++     EVI+ V+NRL  + K  +
Sbjct: 559 NFRRLSVDHIVPSYRKSDNRLILLDYDGTVMPEGSIDKAPSNEVIS-VLNRLCEDPKNRV 617


>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 475 PVSVIVHTQLKLKSQFISLVNN 410
           P  +IVH + K++SQF  ++NN
Sbjct: 93  PTEMIVHLRFKIRSQFCMILNN 114


>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 446 QLSMDN--DGDRASFGDGADKTSHRLSWRIYPL 538
           QLSMD   D  +  F  G D TSH L+W ++ L
Sbjct: 311 QLSMDEIIDECKTFFFAGHDTTSHLLTWTMFLL 343


>05_01_0150 + 1000613-1001275
          Length = 220

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 229 EGLHYCSLVVADNYTVVQLFVRVDVIEWRKLFVVNKCNREVA*RCKGRLR 80
           EG +YCS  V D+Y+  Q+++R      +K  V     R +A  C GR+R
Sbjct: 79  EGWYYCSPRVVDSYSCRQIYLRSYTFSKKKETVP---ERTMA--CLGRVR 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,821
Number of Sequences: 37544
Number of extensions: 231088
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)