Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P18
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17270.1 68414.m02103 expressed protein                             27   6.1  
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    27   8.0  

>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 65  LSALVTQASLTPLSNLTVAFINYEELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLEND 244
           +S+ V ++ L  L+ L    +    L    N NS   +  SVV+ + KAA++K + +  +
Sbjct: 102 MSSRVKESELQALNLLRQQQLALVSLLNRTNFNSSNAISSSVVIDNVKAALLKQISVNKE 161


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 122 FINYEELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLENDGKGE 256
           F+NY  L         E + D    GD+  A ++   L   G+GE
Sbjct: 619 FVNYGYLKNWKEKEVCESIRDRFTTGDWSKAALRDKNLGTGGEGE 663


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,445
Number of Sequences: 28952
Number of extensions: 190356
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)