Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P17
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   2.2  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   5.0  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    25   5.0  

>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 137 NDRSYWLSTGQPIPMMPVEGNEIVKYISRCV 229
           ND + +L+TGQP+  + +   E +++++  V
Sbjct: 215 NDHTRFLATGQPVAYIKLTPEEYIRFLTNPV 245


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -2

Query: 295 WATWNV*CLAVDSYNIRWHFAYNTSRNVFYYLI 197
           W  W V    +D  + RW + +  + + + YL+
Sbjct: 57  WEDWKVLATTIDKASGRWKWRFTPASDKYDYLL 89


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 173 IPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWI 319
           +P  PVEGN  ++Y    ++  V +  +A ++Q L       G+ E  I
Sbjct: 102 VPSSPVEGNREIQYAFEPMILHVQTRSLA-NAQHLQRVAASCGFRETGI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,935
Number of Sequences: 5004
Number of extensions: 35255
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)