Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P17
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 6e-46
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 1e-33
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 122 1e-28
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 75 2e-14
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.077
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 31 0.31
SB_10559| Best HMM Match : HAT (HMM E-Value=2) 31 0.54
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.72
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7) 29 1.3
SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 1.3
SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14) 29 1.3
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5) 29 1.3
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 3.8
SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 180 bits (437), Expect = 6e-46
Identities = 74/112 (66%), Positives = 92/112 (82%)
Frame = +2
Query: 2 SLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPM 181
SLLY+ GNE+AH QDLG GSC+++FSTMPFLFC++N+VCN ASRND S+WLST +PIPM
Sbjct: 1601 SLLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCNINNVCNLASRNDYSFWLSTPEPIPM 1660
Query: 182 MPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVM 337
MPV+ + YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+M
Sbjct: 1661 MPVQETNVQPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLM 1712
Score = 112 bits (270), Expect = 1e-25
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = +2
Query: 203 IVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLAS 382
++ YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+MHT L+S
Sbjct: 1711 LMPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSS 1770
Query: 383 PGSCLEDFRAIPFIECN 433
PGSCLEDFRA PFIEC+
Sbjct: 1771 PGSCLEDFRAHPFIECH 1787
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +2
Query: 263 HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 433
HSQT+ +P CP LW GYS +++ L SPGSC++ F +PF+ CN
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYS-LLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCN 1635
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 5 LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ----- 169
L++ Q L GSC+ F PF+ C C+Y + S+WL+T
Sbjct: 1754 LMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGRGTCHYYG-STYSFWLATVDQNKQF 1812
Query: 170 --PIPMMPVEGNEIVKYISRCVVCE 238
P P GN + + +SRC VC+
Sbjct: 1813 RIPRPETLKAGN-LRERVSRCQVCQ 1836
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 139 bits (336), Expect = 1e-33
Identities = 66/144 (45%), Positives = 87/144 (60%)
Frame = +2
Query: 2 SLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPM 181
SLLY+ G++ +H QDLG AGSC+++F+TMP+L+C++ CNYASRND SYWLST +PM
Sbjct: 1487 SLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRNDYSYWLSTDNQVPM 1546
Query: 182 MPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXX 361
MP++ + + YISRC VCE V+AVHS+ + HT
Sbjct: 1547 MPIQASAVEPYISRCTVCESHGPVMAVHSK-----------------HDLTNHTGAGGSG 1589
Query: 362 XXXXLASPGSCLEDFRAIPFIECN 433
L S GSCLE FR PF EC+
Sbjct: 1590 TGQSLGSSGSCLESFRPNPFTECH 1613
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 254 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 433
I HSQT P CP + +LW GYS +++ L GSCL+ F +P++ CN
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 1521
Score = 43.2 bits (97), Expect = 9e-05
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 41 QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GNEIV 208
Q LG +GSC+ F PF C C+Y + N S+WL+T P E ++
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLL 1650
Query: 209 KYISRCVVC 235
+SRC VC
Sbjct: 1651 SRVSRCQVC 1659
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 122 bits (295), Expect = 1e-28
Identities = 52/95 (54%), Positives = 62/95 (65%)
Frame = +2
Query: 149 YWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYS 328
YWLST +PMMP++ + + YISRC VCE V+AVHSQ+ +P CP GWS LW GYS
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYS 61
Query: 329 FVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 433
F+MHT L S GSCLE FR PFIEC+
Sbjct: 62 FLMHTGAGGSGTGQSLGSSGSCLESFRPNPFIECH 96
Score = 45.2 bits (102), Expect = 2e-05
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 5 LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST-GQPIPM 181
L++ Q LG +GSC+ F PF+ C C+Y + N S+WL+T P
Sbjct: 63 LMHTGAGGSGTGQSLGSSGSCLESFRPNPFIECHGRGTCHYYA-NKYSFWLATVNTPFQT 121
Query: 182 MPVE---GNEIVKYISRCVVC 235
E ++ +SRC VC
Sbjct: 122 QQSETLKAGNLLSRVSRCQVC 142
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 75.4 bits (177), Expect = 2e-14
Identities = 29/50 (58%), Positives = 42/50 (84%)
Frame = +2
Query: 2 SLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSY 151
SLLY+ G++ +H QDLG AGSC+++F+TMP+L+C++ CNYASRND S+
Sbjct: 91 SLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRNDYSH 140
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 254 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 433
I HSQT P CP + +LW GYS +++ L GSCL+ F +P++ CN
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 125
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 33.5 bits (73), Expect = 0.077
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +2
Query: 194 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 340
GN + + C VC VPS S L IP CP GWS + GY H
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEH 101
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 425 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 456
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 340
C VC VPS S L IP CP GWS + GY H
Sbjct: 151 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSH 187
>SB_10559| Best HMM Match : HAT (HMM E-Value=2)
Length = 123
Score = 30.7 bits (66), Expect = 0.54
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 340 MHDKTVTNPQFTPSYWATWN 281
MH +++P+ TPS+W TW+
Sbjct: 23 MHASQISDPRRTPSFWKTWH 42
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGY 325
C VC VPS + + CP GWS + GY
Sbjct: 112 CAVCYVPSR--STQLMIPSVARCPTGWSREYYGY 143
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.9 bits (64), Expect = 0.95
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 194 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
G + + C VC VPS S L IP CP GWS + GY
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 120
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 77 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 108
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 125 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 156
>SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 53 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 84
>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 198 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 229
>SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7)
Length = 118
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35)
Length = 374
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 99 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 130
>SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
Length = 558
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 84 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 115
>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
Length = 321
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 340
C VC V S S L IPG CP GWS + GY H
Sbjct: 225 CAVCYVSSR-----SAKLLIPGTNVCPAGWSREYHGYLMTAH 261
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 82 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 113
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 224 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 325
C VC VPS S L IP CP GWS + GY
Sbjct: 701 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 732
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 11 YIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 169
Y D + K + + G +G S PFL C L+ C A R S L T +
Sbjct: 364 YWDNSFKCFSTESGQSGCTRIATSPQPFLSCSLSFACLLAHRASVSLDLDTSK 416
>SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 111 LRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIY 10
+R R I++ R+ A SW+ +F FPSIY
Sbjct: 127 VRPPHRGQILVTKRSVALAISSSWIFSFMFPSIY 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,521
Number of Sequences: 59808
Number of extensions: 265564
Number of successful extensions: 583
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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