Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P17
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52490.1 68416.m05772 heat shock protein-related contains sim...    28   2.4  
At3g06520.1 68416.m00756 agenet domain-containing protein contai...    28   3.1  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    27   5.5  
At1g60380.1 68414.m06798 apical meristem formation protein-relat...    27   5.5  

>At3g52490.1 68416.m05772 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 815

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 297 TGQPGMSNVWLWTAITLDGTSHTTHLEM 214
           +GQP + ++W  T +T+  TS++  L +
Sbjct: 349 SGQPSLESLWCLTTLTIPATSNSLRLSL 376


>At3g06520.1 68416.m00756 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 466

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 108 RSQKRNGIVLNFRTHEPAYPRSWLCA 31
           R Q   G ++  R+ E AY  SW CA
Sbjct: 166 RDQYEKGALVEVRSEEKAYKGSWYCA 191


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  EKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASR 136
           EKAH  D    G  VR+F T+ F   + ++  + ASR
Sbjct: 71  EKAHRLDPSSGGRGVRQFKTLLFQRLERDNASSLASR 107


>At1g60380.1 68414.m06798 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 318

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 170 PIPMMPVEGNEIVKYISRCVVCEVPSNVIAVH 265
           P+ +M  EG +   Y++  V C  PS ++ VH
Sbjct: 183 PVTIMISEGKDWPSYVTNNVYCLHPSELVNVH 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,218,198
Number of Sequences: 28952
Number of extensions: 176876
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)