Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P16
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    86   4e-18
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    33   0.023
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    31   0.092
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.49 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    29   0.65 
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   1.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    27   1.5  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   3.5  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   6.1  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   6.1  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    25   6.1  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   6.1  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   8.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   8.0  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.0  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   8.0  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
 Frame = +3

Query: 258 AKGKTLNDEDTLKSLNIQNGYKLYVKDLGPQISWKNVFLAEYAGPLFVYL-WVYQRPWIL 434
           A G TL    TL+   +  G  ++VKDLGPQI W+ VF+ EY GPL ++L ++    WI 
Sbjct: 50  ADGTTLLPNTTLRKYGVGPGATIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIY 109

Query: 435 YGEQTSTPGHVATVAAVCWSAHYAKRLFETQFIHRFSHGTMPLTNLFK 578
             +          +A V    H+ KR +E+ F+HRFS  TMPL N+FK
Sbjct: 110 RKDYNLCLNQ--KIAFVLVMLHFMKREYESIFVHRFSLATMPLRNIFK 155


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 33.5 bits (73), Expect = 0.023
 Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +3

Query: 156 IQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLY-V 332
           + ++ ES++  +KE I  +    +  +RQ  +L   G+ L DE++LK+  IQ+G+ ++ V
Sbjct: 18  VTVDSESSVLALKEAI--APVADIEKERQ--RLIYAGRVLKDEESLKTYKIQDGHSIHLV 73

Query: 333 KDLG 344
           K LG
Sbjct: 74  KTLG 77


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -1

Query: 331 TYSLYPFCMFKDFRVSSSFKVLPLASNLIACRSGYNEVFTLEWIFSFTFFI 179
           T   Y F   +D  + S +  LP  S    C S Y E F LEW+ + TF I
Sbjct: 366 TVKYYNFLKKQDDSILSQYHYLPSTS----CISDYGETFLLEWMKTNTFRI 412


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 357 WKNV-FLAEYAGPLFVYLWVYQRPWILYGEQTSTPGHVATVAAVCWSAHYAKRLFETQFI 533
           W +  +L    G L +YL +++  + +YG +     H++ V  + ++    K++ + Q I
Sbjct: 541 WSSTDYLRATLGALTIYLLLFESKFNMYGNKAEEISHMSEVEQIAYAREDNKKIMKLQKI 600


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 186 NVKEKIHSSVK-TSLYP--DRQAIKLEAKGKTLNDEDTLKSLNIQNGYK 323
           + KE+    VK  S+YP  + ++  +E  GK+L D D+L  L + N  K
Sbjct: 383 SAKEEESDKVKGESVYPKPESESYDVEMNGKSLEDSDSLSELYLTNEEK 431


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 141 KPLGKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDED 287
           KP  K   N E   KN  E          YP  +++K    G T+ DE+
Sbjct: 27  KPRKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLESLKTVGNGDTIQDEE 75


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +3

Query: 153 KIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLYV 332
           K +LN     K+V+E   +  K          + E++GKT ++   L    ++N  KL+ 
Sbjct: 38  KKELNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSKLF- 96

Query: 333 KDLGPQIS 356
            D+   +S
Sbjct: 97  NDINEDVS 104


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +3

Query: 153 KIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKT--LNDEDTLKSLN 305
           KI +N+ES++ + +EKI S ++  L P    +K +  G T  L+++   KSL+
Sbjct: 235 KIMINKESSLFDSQEKIDSQLEKFLQP----LKYDEIGSTQILDEQSVEKSLS 283


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 6   RYLILISCASISKIEIVYLFRRVIDFKFSG*FTIMEIEILSVAGSKPLGKIQLNEESTIK 185
           RY+++ +C SI KI    L     + KFS       +E+L +  +     + +++  ++K
Sbjct: 525 RYIVIGTCHSIEKIPYEILSESFFELKFSELEMDERLELLKIYAN----NVIIDKRISLK 580

Query: 186 NVKEKIHS 209
           +V  K +S
Sbjct: 581 DVALKTNS 588


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 50  NCLLIQTCNRFQIFWIIYNNGDRNFKRCW--FQTSRKNS 160
           +C +I    +FQ F+   N   R  +RCW  F+  + NS
Sbjct: 563 HCGIIDITEKFQDFFTQLNLSPRIERRCWVLFREYKSNS 601


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 117 EILSVAGSKPLGKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTL 275
           ++   AGS     IQ+N+E   + +   + SS+K +++  +     +  G+TL
Sbjct: 201 DLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTL 253


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 159 QLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSL 302
           +L+ ++ IKN +EK H      L    + +K   + K+ ND D + ++
Sbjct: 91  KLHLKTIIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSNDHDLMLAI 138


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 24  SCASISKIEIVYLFRRVIDFKFS 92
           S  ++S+I  V+LFR + DF++S
Sbjct: 86  SVQNVSRIRQVFLFRDMADFQYS 108


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 192 KEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDT 290
           K ++HS ++   Y   ++I  + KG ++N E+T
Sbjct: 599 KAEMHSWIEAIQYSISESIVQKGKGTSMNSEET 631


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 370 FWLNMPGHYSY 402
           FWL+  GHYSY
Sbjct: 462 FWLSWSGHYSY 472


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 141 KPLGKIQLNEESTIKNVKEKIHSSVKTS 224
           KP+GK++   E+  K++ + + SS+++S
Sbjct: 343 KPVGKLEKKFENLEKSIGDTLKSSIRSS 370


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 KTLNDEDTLKSLNIQNGYKLYVK 335
           K   DED LKS  I++ Y +YVK
Sbjct: 202 KKYGDEDQLKSNPIRHLYDVYVK 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,128
Number of Sequences: 5004
Number of extensions: 50073
Number of successful extensions: 153
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)