Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_P16
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 83 2e-16
07_01_0442 - 3348638-3349126,3349978-3350322 33 0.22
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 31 0.88
11_01_0066 - 536281-537196,537397-537452 29 2.7
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 28 4.7
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 28 4.7
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 28 4.7
03_03_0045 - 14029375-14029400,14029515-14029547,14030407-140304... 28 4.7
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 82.6 bits (195), Expect = 2e-16
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Frame = +3
Query: 150 GKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAK-GKT-----LNDEDTLKSLNIQ 311
G ++ ++ + ++++ I++ K YP RQ + L + GK+ L+ + +L +
Sbjct: 39 GGLRSRGKAKVADLQDAIYAKTK-KYYPARQRLTLPIQPGKSGKPVVLSAKASLSEYCEK 97
Query: 312 NGYKLYV--KDLGPQISWKNVFLAEYAGPLFVYLWVYQRPWILY----GEQTSTPGHVAT 473
L V KDLGPQ+ + +F EY GPL +Y Y P Y GE+ P V T
Sbjct: 98 GSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHP--VQT 155
Query: 474 VAAVCWSAHYAKRLFETQFIHRFSHGTMPLTNLFK 578
A W HY KR+ ET F+HRFSH T P++N+F+
Sbjct: 156 YAMYYWCFHYFKRIMETFFVHRFSHATSPVSNVFR 190
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 405 LWVYQRPWILYGEQTSTPGHVATVAAVCWSA----HYAKRLFETQFIHRFSHGTMPL 563
L Y ++ + PG V V A SA H+ KR+ E FIH++S G+MPL
Sbjct: 73 LVAYVPAFVAAAASFAVPGAVVGVRAQVLSAALTVHFLKRILEVLFIHQYS-GSMPL 128
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 405 LWVYQRPWILYGEQTSTPGHVATVAAVCWSAHYAKRLFET--QFIHRFSHGTMPLTNLFK 578
LW++ W+++ TST GH A CW HYA+ + + Q + ++S G+ LT ++
Sbjct: 842 LWLFG--WVMF---TSTHGH----AMDCWLVHYARSIADAQPQDVPQWSWGSAVLTATYR 892
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +3
Query: 426 WILYGEQTSTPG-HVATVAAVCWSAHY--AKRLFETQFIH 536
WI G +TP H+A +A CW H A FET H
Sbjct: 5 WIRRGASRATPAPHIAELAKECWREHLLGASIPFETFTFH 44
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 LNEESTIKNVKEKIHSSVKTSLYPDRQAIKL 254
+NEE+ I V E + VK + +PD + +++
Sbjct: 329 INEEAEISEVTEAVKQQVKDAKFPDIEVVRM 359
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 135 GSKPLGKIQLNEESTIKNVKEKIHSSV---KTSLYPDRQAIKLEAKGKTLNDEDTLKSLN 305
G++ +GK+ NE+ T KEK V K+ L P + E + T +E LK L+
Sbjct: 282 GNEEMGKVNCNEKHTYGEEKEKEKEKVVETKSELKPKPRRKNWEEEELTW-EEKVLKVLH 340
Query: 306 IQNGYKLYVKDLGPQISW 359
+ ++ V + P++ W
Sbjct: 341 MVRIWE--VTEFDPKMEW 356
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 234 DRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLYVKDLGPQISWKNVFLAEYAG 389
D QA+ E +G + + L++LN++ ++ +KD+ IS K + E AG
Sbjct: 170 DGQALA-EKEGLSFLETSALEALNVEKAFQTILKDIHQIISKKALAAQEAAG 220
>03_03_0045 -
14029375-14029400,14029515-14029547,14030407-14030446,
14030527-14030736
Length = 102
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +3
Query: 105 IMEIEILSVAGSKPLGKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDE 284
+M+ + V +K IQ + T ++K+K+HS V ++Q I L L+D
Sbjct: 5 LMQAMYIRVKRNKTTYFIQCDPTETTLSIKQKLHSLVDQP-PGNQQLILLATTEVVLDDS 63
Query: 285 DTLKSLNIQN 314
TL ++N
Sbjct: 64 KTLADQKVEN 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,704
Number of Sequences: 37544
Number of extensions: 269131
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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